Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 2.9e-123 445.3 227 100.0
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 4.2e-82 308.5 214 72.0
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 5.3e-77 291.6 218 70.2
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 1.5e-76 290.0 222 69.4
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 2.6e-76 289.3 222 69.4
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 5.8e-76 288.1 218 68.8
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 7.6e-76 287.7 218 68.3
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 7.6e-76 287.7 229 64.6
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.0e-75 287.3 216 69.0
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.0e-75 287.3 225 67.1
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.0e-75 287.3 214 66.4
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 1.3e-75 287.0 223 67.7
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.3e-75 287.0 224 68.3
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 1.3e-75 287.0 226 67.3
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.2e-75 286.2 216 68.1
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 2.9e-75 285.8 216 68.1
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.9e-75 285.8 218 68.3
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 2.9e-75 285.8 215 68.8
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 3.8e-75 285.4 224 68.8
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 3.8e-75 285.4 222 67.6
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 4.9e-75 285.0 216 67.6
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 6.5e-75 284.6 212 66.0
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 1.1e-74 283.9 216 67.6
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.1e-74 283.9 216 67.1
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.4e-74 283.5 216 68.1
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 1.9e-74 283.1 216 68.1
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.9e-74 283.1 230 65.2
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.9e-74 283.1 224 67.0
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.9e-74 283.1 225 65.8
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.5e-74 282.7 216 67.6
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 2.5e-74 282.7 216 66.7
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.2e-74 282.3 225 65.3
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 4.2e-74 282.0 216 67.6
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 4.2e-74 282.0 216 67.1
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 5.5e-74 281.6 218 67.4
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 7.1e-74 281.2 225 66.7
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 7.1e-74 281.2 216 67.6
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 7.1e-74 281.2 216 67.6
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 9.3e-74 280.8 222 65.8
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 9.3e-74 280.8 225 64.9
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 9.3e-74 280.8 222 64.0
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 9.3e-74 280.8 230 64.8
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 9.3e-74 280.8 214 66.8
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 1.2e-73 280.4 216 67.1
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.6e-73 280.0 216 66.7
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.6e-73 280.0 225 64.9
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 1.6e-73 280.0 216 66.7
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 2.1e-73 279.6 220 66.4
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 2.1e-73 279.6 220 66.4
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.7e-73 279.3 222 65.8
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.7e-73 279.3 218 65.6
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 2.7e-73 279.3 216 66.2
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.7e-73 279.3 222 65.8
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 2.7e-73 279.3 219 65.3
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 4.6e-73 278.5 226 65.0
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 4.6e-73 278.5 220 65.9
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 4.6e-73 278.5 216 66.7
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 6.0e-73 278.1 216 66.7
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 6.0e-73 278.1 225 64.9
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 6.0e-73 278.1 220 65.5
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 6.0e-73 278.1 233 64.4
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 1.0e-72 277.3 218 67.4
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 1.0e-72 277.3 230 63.0
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.0e-72 277.3 222 66.7
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.3e-72 276.9 216 67.1
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.3e-72 276.9 220 65.9
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.3e-72 276.9 222 65.8
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.3e-72 276.9 216 66.2
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.8e-72 276.6 216 66.2
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.8e-72 276.6 222 66.2
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.8e-72 276.6 225 65.8
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.8e-72 276.6 216 66.7
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 2.3e-72 276.2 223 64.6
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 2.3e-72 276.2 226 62.8
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.3e-72 276.2 225 65.8
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 3.0e-72 275.8 224 64.7
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 3.9e-72 275.4 220 64.5
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 3.9e-72 275.4 216 66.2
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 3.9e-72 275.4 216 66.2
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 5.1e-72 275.0 218 64.2
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 8.7e-72 274.2 216 65.3
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.1e-71 273.9 216 66.2
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.1e-71 273.9 214 65.0
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 1.1e-71 273.9 223 64.1
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.1e-71 273.9 209 68.4
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 1.9e-71 273.1 209 68.4
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.9e-71 273.1 220 64.1
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 1.9e-71 273.1 232 62.5
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.5e-71 272.7 230 62.2
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 3.3e-71 272.3 221 64.7
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 3.3e-71 272.3 216 65.3
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.3e-71 272.3 217 65.9
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 4.3e-71 271.9 226 62.8
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 7.4e-71 271.2 214 66.4
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.6e-70 270.0 222 63.1
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 2.8e-70 269.2 225 64.9
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 3.7e-70 268.9 203 68.0
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 6.2e-70 268.1 222 61.7
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 1.8e-69 266.5 203 69.0
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.8e-69 266.5 213 66.7
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.4e-69 266.2 211 66.8
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 4.1e-69 265.4 207 65.2
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 9.0e-69 264.2 216 62.0
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.2e-68 263.8 206 67.0
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 2.6e-68 262.7 210 64.3
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 2.6e-68 262.7 207 65.7
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 3.4e-68 262.3 206 66.0
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 7.6e-68 261.2 209 65.6
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 7.6e-68 261.2 209 65.1
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 2.2e-67 259.6 223 62.8
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.2e-67 259.6 205 65.4
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 8.4e-67 257.7 268 53.0
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 8.4e-67 257.7 216 63.0
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 7.1e-66 254.6 205 63.4
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 9.3e-66 254.2 203 64.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.8e-64 250.0 200 65.5
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 2.3e-64 249.6 226 59.3
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 2.8e-62 242.7 237 55.7
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 6.3e-62 241.5 214 60.7
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.8e-59 232.3 180 66.1
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 5.0e-59 231.9 184 64.1
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 5.0e-59 231.9 186 65.1
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 5.5e-58 228.4 179 65.9
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 1.4e-56 223.8 224 57.1
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 9.1e-53 211.1 168 65.5
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 2.2e-51 206.5 214 51.9
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 9.4e-50 201.1 164 63.4
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 1.0e-48 197.6 214 54.7
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.4e-48 197.2 222 52.7
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.3e-48 196.4 164 62.2
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 4.8e-46 188.7 157 63.1
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 4.1e-45 185.7 197 53.3
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.2e-44 184.1 193 54.4
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 4.5e-44 182.2 148 65.5
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 1.5e-42 177.2 139 64.7
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 2.5e-42 176.4 158 60.1
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 8.2e-38 161.4 188 49.5
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.0e-36 156.8 127 62.2
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 2.2e-30 136.7 99 64.6
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.0e-27 127.9 111 60.4
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.3e-22 110.9 117 55.6
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.0e-20 103.6 76 65.8
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.5e-20 102.8 109 52.3
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.5e-18 96.7 60 76.7
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 3.0e-16 89.7 82 58.5
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.6e-12 77.4 74 58.1
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 2.0e-12 77.0 134 38.8
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.9e-10 70.5 49 71.4
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 6.2e-09 65.5 211 27.0
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 6.8e-08 62.0 63 54.0
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 3.7e-06 56.2 70 47.1


User provided reference genes

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