Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 1.7e-288 995.3 507 100.0
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 4.0e-149 532.3 484 56.0
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 3.7e-147 525.8 460 56.7
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 1.1e-146 524.2 484 55.4
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.8e-142 509.6 466 54.1
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 5.7e-140 501.9 463 52.7
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 5.4e-138 495.4 475 53.5
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.6e-137 493.8 491 50.1
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.6e-137 493.8 500 51.2
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.0e-137 493.4 500 50.4
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.0e-137 493.4 477 51.6
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 4.6e-137 492.3 500 50.6
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 7.8e-137 491.5 477 50.9
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 7.8e-137 491.5 477 50.9
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 7.8e-137 491.5 477 50.9
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 7.8e-137 491.5 460 52.2
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 3.9e-136 489.2 504 49.6
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 5.0e-136 488.8 500 50.2
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 6.6e-136 488.4 477 49.9
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 8.6e-136 488.0 464 52.6
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 1.1e-135 487.6 488 51.0
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.5e-135 487.3 470 50.6
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 3.3e-135 486.1 477 49.7
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.3e-135 486.1 463 49.7
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 4.3e-135 485.7 462 53.5
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 5.6e-135 485.3 464 52.4
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 5.6e-135 485.3 462 51.7
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 5.6e-135 485.3 471 51.6
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 9.5e-135 484.6 466 52.6
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.6e-134 483.8 487 50.7
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 2.1e-134 483.4 463 52.7
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.8e-134 483.0 481 51.4
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.8e-134 483.0 462 48.7
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 4.7e-134 482.3 484 50.0
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 4.7e-134 482.3 464 53.0
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 6.1e-134 481.9 483 50.9
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 6.1e-134 481.9 464 51.7
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 6.1e-134 481.9 479 49.9
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 8.0e-134 481.5 479 48.2
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 8.0e-134 481.5 487 51.5
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 1.0e-133 481.1 469 52.0
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.4e-133 480.7 464 51.3
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.8e-133 480.3 477 49.1
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.8e-133 480.3 483 50.1
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.8e-133 480.3 464 50.4
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 2.3e-133 479.9 463 52.1
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.3e-133 479.9 480 49.8
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 3.1e-133 479.6 489 49.9
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 4.0e-133 479.2 464 50.9
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 4.0e-133 479.2 462 51.9
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 4.0e-133 479.2 498 50.2
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 4.0e-133 479.2 486 51.0
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 4.0e-133 479.2 462 51.1
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 6.8e-133 478.4 476 50.8
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 6.8e-133 478.4 481 51.4
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 8.9e-133 478.0 481 51.1
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.2e-132 477.6 481 50.1
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.5e-132 477.2 481 50.1
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 2.0e-132 476.9 462 51.3
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 2.0e-132 476.9 464 52.4
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 2.0e-132 476.9 464 50.0
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 2.6e-132 476.5 463 51.6
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.6e-132 476.5 464 50.9
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 5.8e-132 475.3 481 50.5
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 5.8e-132 475.3 486 50.4
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 5.8e-132 475.3 475 50.5
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 7.5e-132 474.9 462 51.1
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 9.8e-132 474.6 471 48.0
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 1.3e-131 474.2 498 50.0
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.3e-131 474.2 480 49.0
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.7e-131 473.8 483 49.7
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.7e-131 473.8 462 50.4
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 2.9e-131 473.0 495 49.1
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 3.7e-131 472.6 464 50.6
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 3.7e-131 472.6 501 49.7
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 4.9e-131 472.2 471 50.5
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 6.4e-131 471.9 486 50.2
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.1e-130 471.1 463 50.3
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.9e-130 470.3 489 50.5
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 3.2e-130 469.5 463 51.0
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 3.2e-130 469.5 479 49.9
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 3.2e-130 469.5 481 49.5
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 4.1e-130 469.2 489 49.1
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 5.4e-130 468.8 479 50.1
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 9.2e-130 468.0 461 49.7
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 9.2e-130 468.0 484 48.6
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 9.2e-130 468.0 462 50.2
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 2.0e-129 466.8 486 49.4
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.0e-129 466.8 456 52.6
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 2.7e-129 466.5 468 50.9
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 6.0e-129 465.3 486 47.9
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.7e-128 463.8 462 47.8
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.7e-128 463.8 468 50.6
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 5.0e-128 462.2 473 50.1
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.1e-127 461.1 481 48.9
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 2.5e-127 459.9 467 50.1
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.3e-127 459.5 445 52.6
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 4.7e-126 455.7 451 48.8
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.5e-124 450.7 438 51.4
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 7.5e-124 448.4 447 50.3
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.7e-123 447.2 440 51.8
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 6.4e-123 445.3 441 50.1
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 1.4e-122 444.1 474 48.3
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 2.4e-122 443.4 470 49.1
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 7.8e-121 438.3 440 50.7
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 2.3e-120 436.8 483 48.4
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 6.8e-117 425.2 467 48.6
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 2.0e-116 423.7 377 54.9
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.6e-116 423.3 464 48.9
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.2e-115 420.2 460 47.6
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 4.9e-115 419.1 505 45.5
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.7e-110 402.5 407 49.4
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.1e-109 401.4 462 46.8
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.8e-109 400.6 494 44.5
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.8e-102 376.7 475 43.2
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.2e-100 371.3 384 47.9
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 5.1e-96 355.9 602 38.9
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 1.5e-95 354.4 438 42.9
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 4.6e-89 332.8 534 40.4
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.9e-87 327.4 307 53.1
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 4.5e-84 316.2 338 47.3
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 4.6e-81 306.2 263 54.8
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.0e-80 305.1 347 46.4
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 5.1e-80 302.8 470 39.4
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 5.1e-80 302.8 305 47.9
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 5.3e-77 292.7 464 40.3
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 2.0e-76 290.8 298 51.0
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 2.6e-76 290.4 298 50.3
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 5.0e-75 286.2 380 42.4
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 3.2e-66 256.9 248 48.8
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.0e-36 157.9 158 49.4
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 3.7e-30 137.1 243 36.2
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 3.1e-29 134.0 216 36.1
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.3e-24 117.9 108 58.3
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 6.4e-22 109.8 133 44.4
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 2.0e-20 104.8 100 52.0
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 9.5e-18 95.9 153 35.9
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.6e-17 95.1 112 42.0
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 4.4e-15 87.0 68 61.8
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 4.1e-13 80.5 87 44.8
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.0e-12 78.2 84 50.0
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 5.0e-11 73.6 78 48.7
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 3.4e-07 60.8 63 49.2


User provided reference genes

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