Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 3.8e-38 161.0 80 100.0
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 5.9e-31 137.1 78 84.6
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 1.3e-30 136.0 78 83.3
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 2.9e-30 134.8 78 83.3
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 3.8e-30 134.4 80 81.2
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 3.8e-30 134.4 78 82.1
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 3.8e-30 134.4 78 83.3
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 5.0e-30 134.0 78 83.3
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 6.5e-30 133.7 78 82.1
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 8.5e-30 133.3 78 84.6
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 1.1e-29 132.9 78 83.3
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 1.1e-29 132.9 78 83.3
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 1.1e-29 132.9 78 82.1
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.4e-29 132.5 78 82.1
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 1.4e-29 132.5 78 79.5
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.4e-29 132.5 80 80.0
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 1.9e-29 132.1 78 83.3
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 1.9e-29 132.1 78 82.1
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 2.5e-29 131.7 78 82.1
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 3.2e-29 131.3 78 83.3
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 4.2e-29 131.0 78 79.5
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 4.2e-29 131.0 78 80.8
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 5.5e-29 130.6 78 80.8
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 7.2e-29 130.2 78 79.5
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 7.2e-29 130.2 78 82.1
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 7.2e-29 130.2 78 80.8
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 9.4e-29 129.8 78 80.8
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 1.2e-28 129.4 78 80.8
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 1.2e-28 129.4 78 80.8
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.2e-28 129.4 78 80.8
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.2e-28 129.4 78 80.8
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.2e-28 129.4 78 80.8
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 1.2e-28 129.4 78 80.8
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 1.2e-28 129.4 78 79.5
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 1.2e-28 129.4 78 80.8
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 1.2e-28 129.4 78 80.8
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 1.6e-28 129.0 78 80.8
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 1.6e-28 129.0 78 80.8
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 1.6e-28 129.0 78 80.8
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 1.6e-28 129.0 78 80.8
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 2.1e-28 128.6 80 76.2
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 2.1e-28 128.6 78 78.2
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 2.1e-28 128.6 78 79.5
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 2.7e-28 128.3 78 80.8
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 3.6e-28 127.9 78 78.2
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 3.6e-28 127.9 78 78.2
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 3.6e-28 127.9 78 80.8
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 3.6e-28 127.9 78 78.2
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 4.6e-28 127.5 78 78.2
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 4.6e-28 127.5 78 79.5
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 4.6e-28 127.5 78 76.9
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 4.6e-28 127.5 78 78.2
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 6.1e-28 127.1 78 78.2
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 6.1e-28 127.1 78 78.2
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 6.1e-28 127.1 78 79.5
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 6.1e-28 127.1 78 78.2
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 6.1e-28 127.1 78 80.8
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 6.1e-28 127.1 80 77.5
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 7.9e-28 126.7 78 79.5
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 7.9e-28 126.7 78 78.2
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 7.9e-28 126.7 78 76.9
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 7.9e-28 126.7 78 76.9
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 7.9e-28 126.7 78 79.5
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 7.9e-28 126.7 78 78.2
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 1.0e-27 126.3 78 78.2
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 1.0e-27 126.3 78 78.2
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 1.0e-27 126.3 78 79.5
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 1.0e-27 126.3 78 79.5
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 1.4e-27 125.9 78 76.9
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 1.4e-27 125.9 78 79.5
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 1.8e-27 125.6 78 74.4
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 2.3e-27 125.2 78 79.5
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 2.3e-27 125.2 78 78.2
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 2.3e-27 125.2 78 78.2
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 3.0e-27 124.8 78 79.5
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 3.0e-27 124.8 78 76.9
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 3.9e-27 124.4 78 75.6
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 3.9e-27 124.4 78 75.6
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 5.1e-27 124.0 78 79.5
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 5.1e-27 124.0 78 79.5
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 5.1e-27 124.0 78 78.2
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 6.7e-27 123.6 78 76.9
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 6.7e-27 123.6 78 78.2
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 6.7e-27 123.6 80 72.5
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 8.8e-27 123.2 78 79.5
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 8.8e-27 123.2 78 75.6
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 8.8e-27 123.2 78 78.2
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 2.0e-26 122.1 78 75.6
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 2.0e-26 122.1 78 75.6
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 2.5e-26 121.7 78 74.4
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 2.5e-26 121.7 73 82.2
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 3.3e-26 121.3 78 76.9
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 4.3e-26 120.9 78 73.1
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 4.3e-26 120.9 78 73.1
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 4.3e-26 120.9 78 73.1
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 4.3e-26 120.9 78 76.9
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 5.7e-26 120.6 78 73.1
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 5.7e-26 120.6 78 73.1
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 5.7e-26 120.6 78 74.4
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 5.7e-26 120.6 80 70.0
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 7.4e-26 120.2 78 78.2
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 9.7e-26 119.8 78 76.9
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 2.2e-25 118.6 89 66.3
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 3.7e-25 117.9 78 71.8
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 4.8e-25 117.5 78 71.8
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 4.8e-25 117.5 78 71.8
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 6.3e-25 117.1 78 70.5
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 1.4e-24 115.9 78 70.5
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 1.8e-24 115.5 96 62.5
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 2.4e-24 115.2 92 67.4
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 5.3e-24 114.0 68 80.9
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 9.1e-24 113.2 106 58.5
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 3.4e-23 111.3 78 70.5
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 7.9e-20 100.1 62 79.0
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 1.0e-19 99.8 129 47.3
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 1.0e-19 99.8 129 47.3
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 1.5e-18 95.9 51 84.3
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 1.1e-16 89.7 83 55.4
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.4e-16 89.4 48 85.4
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.4e-16 89.4 48 85.4
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.4e-16 89.4 48 85.4
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 2.8e-09 65.1 49 69.4
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 1.2e-07 59.7 32 84.4


User provided reference genes

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