Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 4.0e-119 431.4 215 100.0
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 1.6e-70 270.0 178 71.3
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.0e-70 269.6 178 70.8
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 5.9e-70 268.1 172 72.1
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 5.0e-69 265.0 184 66.8
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 1.1e-68 263.8 184 66.8
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 5.5e-68 261.5 183 68.3
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 7.2e-68 261.2 184 66.8
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 9.4e-68 260.8 172 70.3
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 1.4e-66 256.9 172 69.8
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 3.0e-66 255.8 175 67.4
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 3.0e-66 255.8 200 62.0
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 4.0e-66 255.4 185 67.6
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 5.2e-66 255.0 175 67.4
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 6.8e-66 254.6 172 70.3
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 6.8e-66 254.6 172 69.2
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 1.2e-65 253.8 176 66.5
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 1.2e-65 253.8 180 67.2
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 2.8e-64 249.2 172 67.4
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 2.8e-64 249.2 186 62.9
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 3.7e-64 248.8 180 66.1
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 4.9e-64 248.4 172 66.9
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 6.3e-64 248.1 169 66.9
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 8.3e-64 247.7 191 62.3
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.8e-63 246.5 186 64.0
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 5.4e-63 245.0 178 66.3
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 9.2e-63 244.2 172 65.7
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 9.2e-63 244.2 186 62.4
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 1.6e-62 243.4 186 62.9
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 2.7e-62 242.7 172 64.5
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 3.5e-62 242.3 172 65.1
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 5.9e-62 241.5 186 63.4
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 5.9e-62 241.5 172 65.1
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 7.7e-62 241.1 198 59.6
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 1.0e-61 240.7 185 63.2
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.0e-61 240.7 172 67.4
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 1.0e-61 240.7 172 67.4
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 2.3e-61 239.6 179 64.2
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 2.9e-61 239.2 179 64.2
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 3.8e-61 238.8 178 63.5
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 3.8e-61 238.8 185 63.2
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 5.0e-61 238.4 186 61.3
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 8.6e-61 237.7 165 67.9
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 8.6e-61 237.7 188 62.2
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 8.6e-61 237.7 172 67.4
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 8.6e-61 237.7 172 67.4
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 8.6e-61 237.7 172 67.4
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 8.6e-61 237.7 172 67.4
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 1.1e-60 237.3 179 63.1
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 1.5e-60 236.9 186 61.3
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 1.5e-60 236.9 172 65.1
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 1.9e-60 236.5 172 65.7
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 2.5e-60 236.1 172 65.7
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 2.5e-60 236.1 167 65.3
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 3.3e-60 235.7 172 65.7
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 4.3e-60 235.3 172 65.7
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 4.3e-60 235.3 184 63.0
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 4.3e-60 235.3 172 67.4
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 7.3e-60 234.6 172 65.7
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 9.5e-60 234.2 172 64.5
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 9.5e-60 234.2 173 65.3
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 9.5e-60 234.2 173 65.3
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 9.5e-60 234.2 173 65.3
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 1.2e-59 233.8 173 65.3
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 1.2e-59 233.8 173 65.9
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 1.2e-59 233.8 178 64.0
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 1.6e-59 233.4 190 63.2
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 4.7e-59 231.9 172 64.5
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.1e-59 231.5 173 64.7
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.1e-59 231.5 173 64.7
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.1e-59 231.5 173 64.7
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.1e-59 231.5 173 64.7
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.1e-59 231.5 173 64.7
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 6.1e-59 231.5 173 64.7
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 1.0e-58 230.7 175 64.0
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 1.0e-58 230.7 172 64.0
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 1.0e-58 230.7 179 62.6
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 1.4e-58 230.3 165 67.3
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 1.4e-58 230.3 173 64.2
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 1.8e-58 229.9 177 62.1
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.5e-57 226.9 178 64.0
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 3.4e-57 225.7 203 56.2
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 1.7e-56 223.4 179 59.2
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 1.7e-56 223.4 182 61.5
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 2.2e-56 223.0 175 62.3
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 4.9e-56 221.9 179 58.7
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 6.4e-56 221.5 175 61.7
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.1e-55 220.7 170 60.0
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.4e-55 220.3 180 58.3
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 2.4e-55 219.5 175 60.0
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 7.0e-55 218.0 176 59.1
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 1.6e-54 216.9 169 61.5
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 3.5e-54 215.7 180 57.2
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 3.5e-54 215.7 161 65.8
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 5.9e-54 214.9 180 56.7
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 5.9e-54 214.9 180 56.7
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 7.8e-54 214.5 180 56.1
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 1.0e-53 214.2 180 56.1
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 1.7e-53 213.4 169 58.6
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 2.3e-53 213.0 168 59.5
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 1.1e-52 210.7 169 58.6
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.9e-52 209.9 159 64.8
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 2.5e-52 209.5 148 66.9
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 4.3e-52 208.8 180 55.6
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 4.3e-52 208.8 180 55.6
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 4.3e-52 208.8 169 58.0
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 5.6e-52 208.4 149 66.4
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 5.6e-52 208.4 180 55.0
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.2e-51 207.2 179 59.2
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.0e-45 187.6 132 65.2
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 2.8e-43 179.5 168 52.4
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 1.3e-32 144.1 169 40.8
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 1.1e-31 141.0 120 57.5
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 2.4e-31 139.8 175 45.1
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 2.7e-30 136.3 99 64.6
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 8.6e-29 131.3 162 42.6
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 9.6e-28 127.9 114 52.6
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 1.1e-26 124.4 181 40.9
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 7.8e-22 108.2 63 74.6
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 1.5e-20 104.0 67 68.7
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 2.9e-16 89.7 101 45.5
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 7.9e-14 81.6 78 53.8
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 1.9e-12 77.0 62 64.5
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.4e-10 70.9 71 50.7
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 3.1e-10 69.7 128 34.4
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 1.3e-08 64.3 82 42.7
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 2.9e-08 63.2 68 45.6
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 1.4e-07 60.8 59 47.5
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 7.1e-07 58.5 41 63.4
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 4.6e-06 55.8 140 30.7


User provided reference genes

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