Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 8.2e-310 1066.2 544 100.0
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 2.4e-120 436.8 608 42.8
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 1.1e-117 427.9 550 44.4
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 1.3e-116 424.5 571 42.2
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 8.1e-116 421.8 555 43.4
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 1.4e-115 421.0 562 42.0
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 2.4e-115 420.2 555 43.4
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 9.0e-115 418.3 552 43.8
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 9.0e-115 418.3 578 40.0
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 9.0e-115 418.3 564 42.6
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 9.0e-115 418.3 578 42.2
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 5.8e-114 415.6 577 41.8
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 7.6e-114 415.2 599 43.1
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 7.6e-114 415.2 566 42.8
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 9.9e-114 414.8 572 40.9
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 2.2e-113 413.7 577 41.4
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 4.9e-113 412.5 568 41.7
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 6.4e-113 412.1 580 41.7
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 8.4e-113 411.8 553 43.0
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 8.4e-113 411.8 542 44.3
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 8.4e-113 411.8 556 43.0
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 8.4e-113 411.8 556 43.0
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.1e-112 411.4 574 40.9
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.9e-112 410.6 574 41.8
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 1.9e-112 410.6 562 41.3
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 9.3e-112 408.3 542 43.4
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 9.3e-112 408.3 542 43.4
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 9.3e-112 408.3 574 41.6
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 1.2e-111 407.9 553 42.3
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 1.6e-111 407.5 553 42.3
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 2.1e-111 407.1 577 40.6
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 6.0e-111 405.6 579 40.4
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 1.0e-110 404.8 579 40.6
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 1.3e-110 404.4 578 40.8
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 2.3e-110 403.7 573 41.0
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 3.9e-110 402.9 566 41.7
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 3.9e-110 402.9 577 41.4
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 8.7e-110 401.7 569 40.4
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 8.7e-110 401.7 579 41.3
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 1.9e-109 400.6 578 40.3
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 3.3e-109 399.8 563 43.0
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 4.3e-109 399.4 580 39.7
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 5.6e-109 399.1 566 41.9
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 9.6e-109 398.3 580 40.2
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 9.6e-109 398.3 578 40.5
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 9.6e-109 398.3 577 40.6
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 1.3e-108 397.9 577 40.0
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.3e-108 397.9 579 40.9
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 1.6e-108 397.5 580 41.2
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 1.6e-108 397.5 571 40.3
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 1.6e-108 397.5 569 42.0
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 2.1e-108 397.1 579 40.4
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 4.8e-108 396.0 579 40.6
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 1.1e-107 394.8 576 40.5
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 1.1e-107 394.8 566 41.2
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 1.1e-107 394.8 563 40.9
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 1.4e-107 394.4 555 41.8
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 1.8e-107 394.0 578 39.6
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 2.4e-107 393.7 571 39.1
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 3.1e-107 393.3 550 42.2
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 4.0e-107 392.9 555 41.6
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 4.0e-107 392.9 580 40.5
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 6.9e-107 392.1 579 40.1
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 9.0e-107 391.7 578 42.2
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.5e-106 391.0 563 41.2
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 2.0e-106 390.6 559 41.9
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 3.4e-106 389.8 566 39.6
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 3.4e-106 389.8 570 41.1
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.4e-106 389.8 579 40.2
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 3.4e-106 389.8 569 40.2
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 9.9e-106 388.3 577 39.7
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 9.9e-106 388.3 564 40.6
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 3.8e-105 386.3 554 41.7
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 8.4e-105 385.2 567 39.5
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 7.1e-104 382.1 596 38.1
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 1.2e-103 381.3 552 40.9
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.6e-103 380.9 578 38.6
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 4.6e-103 379.4 586 39.1
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 4.6e-103 379.4 607 38.9
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 2.3e-102 377.1 566 40.3
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 3.9e-102 376.3 563 40.7
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 8.7e-102 375.2 569 40.8
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 5.6e-101 372.5 566 38.2
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 2.4e-99 367.1 590 37.6
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 6.9e-99 365.5 554 40.8
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 4.9e-97 359.4 648 35.3
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 1.3e-94 351.3 534 39.3
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 9.6e-93 345.1 567 37.2
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 9.6e-93 345.1 606 36.8
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 5.3e-91 339.3 433 44.6
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 4.5e-90 336.3 382 47.6
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 6.5e-89 332.4 428 43.7
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 4.2e-88 329.7 499 39.7
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 4.1e-83 313.2 514 38.9
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 2.0e-82 310.8 680 33.8
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 1.6e-79 301.2 509 36.7
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 1.0e-78 298.5 498 38.4
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 3.0e-78 297.0 569 34.1
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 1.8e-75 287.7 505 37.0
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 6.9e-75 285.8 296 46.6
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 2.6e-74 283.9 337 45.4
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 9.4e-72 275.4 422 39.3
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 2.1e-71 274.2 477 35.8
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 2.5e-64 250.8 422 36.5
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 4.1e-59 233.4 394 36.0
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.6e-55 221.5 485 32.8
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 2.1e-55 221.1 487 33.3
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.0e-50 204.5 473 34.0
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.9e-50 203.0 360 36.4
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 1.2e-42 178.7 541 28.5
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 7.2e-40 169.5 276 38.0
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 2.0e-37 161.4 461 28.9
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 1.2e-29 135.6 426 26.8
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 3.2e-27 127.5 360 28.9
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 2.0e-26 124.8 88 62.5
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 4.6e-26 123.6 375 28.0
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 1.1e-24 119.0 74 70.3
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 4.1e-19 100.5 208 36.1
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 5.1e-17 93.6 176 33.0
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 4.3e-16 90.5 211 30.8
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 1.2e-13 82.4 121 38.0
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 7.6e-13 79.7 52 67.3
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 9.9e-13 79.3 67 55.2
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 2.9e-12 77.8 146 30.1
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 4.1e-11 73.9 101 34.7
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 4.6e-10 70.5 136 33.8
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 6.0e-10 70.1 51 60.8
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 1.2e-07 62.4 96 38.5
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 1.2e-07 62.4 96 38.5
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 1.2e-07 62.4 45 62.2


User provided reference genes

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