Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 2.5e-161 572.0 280 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 1.2e-102 377.1 277 66.8
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 5.3e-95 351.7 277 60.3
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 5.3e-95 351.7 277 61.7
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.2e-94 350.5 277 59.9
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 1.2e-94 350.5 277 61.7
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 5.9e-94 348.2 277 61.0
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 5.9e-94 348.2 277 59.6
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 5.9e-94 348.2 274 60.9
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 7.7e-94 347.8 277 61.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 7.7e-94 347.8 277 62.1
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 7.7e-94 347.8 277 61.0
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 7.7e-94 347.8 277 59.9
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 1.0e-93 347.4 277 61.0
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.3e-93 347.1 274 61.3
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.3e-93 347.1 277 60.6
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.3e-93 347.1 274 60.9
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 1.3e-93 347.1 277 60.3
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.7e-93 346.7 277 61.0
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 1.7e-93 346.7 277 61.0
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.2e-93 346.3 277 59.9
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 2.2e-93 346.3 277 61.0
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.9e-93 345.9 277 60.3
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.8e-93 345.5 277 61.0
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 3.8e-93 345.5 279 60.6
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 5.0e-93 345.1 277 59.2
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 5.0e-93 345.1 277 60.3
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 5.0e-93 345.1 277 60.3
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 5.0e-93 345.1 279 60.2
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 5.0e-93 345.1 277 61.0
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 8.5e-93 344.4 277 60.3
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 8.5e-93 344.4 277 60.6
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.1e-92 344.0 277 61.0
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.1e-92 344.0 277 59.6
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.1e-92 344.0 274 59.9
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.4e-92 343.6 277 60.3
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.4e-92 343.6 277 60.3
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.4e-92 343.6 277 59.6
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 1.4e-92 343.6 277 60.3
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 1.9e-92 343.2 278 60.8
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.9e-92 343.2 277 59.2
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.9e-92 343.2 275 60.7
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 1.9e-92 343.2 275 60.7
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 2.5e-92 342.8 277 58.5
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 2.5e-92 342.8 277 59.6
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 3.2e-92 342.4 277 59.9
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 3.2e-92 342.4 274 60.6
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 3.2e-92 342.4 277 61.0
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 3.2e-92 342.4 285 59.3
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 3.2e-92 342.4 277 59.6
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 4.2e-92 342.0 274 59.9
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 4.2e-92 342.0 274 60.2
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 4.2e-92 342.0 276 59.1
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 5.5e-92 341.7 277 58.8
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 5.5e-92 341.7 277 58.8
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 7.2e-92 341.3 274 59.1
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 9.4e-92 340.9 277 59.6
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 9.4e-92 340.9 280 59.3
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.2e-91 340.5 279 59.9
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 1.2e-91 340.5 274 59.5
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.2e-91 340.5 277 60.3
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.6e-91 340.1 274 58.8
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 2.1e-91 339.7 276 60.5
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 2.7e-91 339.3 276 60.5
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 3.6e-91 339.0 274 60.2
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 3.6e-91 339.0 277 59.2
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 3.6e-91 339.0 271 60.1
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 6.1e-91 338.2 277 57.8
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 6.1e-91 338.2 277 58.1
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 7.9e-91 337.8 277 59.2
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 7.9e-91 337.8 278 59.4
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.4e-90 337.0 277 58.5
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.4e-90 337.0 276 58.7
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 1.8e-90 336.7 274 59.5
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 2.3e-90 336.3 277 58.1
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.3e-90 336.3 286 59.1
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 3.0e-90 335.9 277 58.8
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 3.0e-90 335.9 277 57.8
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 3.9e-90 335.5 278 59.7
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 5.1e-90 335.1 276 59.1
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 5.1e-90 335.1 277 58.1
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 6.7e-90 334.7 279 57.7
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 6.7e-90 334.7 281 58.7
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 8.8e-90 334.3 277 58.1
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 8.8e-90 334.3 303 56.8
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.5e-89 332.8 291 58.1
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.5e-89 332.8 276 58.3
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 3.3e-89 332.4 276 60.1
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 4.3e-89 332.0 279 57.7
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 4.3e-89 332.0 279 57.3
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 4.3e-89 332.0 279 57.7
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 4.3e-89 332.0 276 59.1
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 7.4e-89 331.3 279 57.3
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 7.4e-89 331.3 279 57.3
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 7.4e-89 331.3 277 56.7
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 2.8e-88 329.3 289 55.7
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 2.8e-88 329.3 274 57.3
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 2.8e-88 329.3 277 57.0
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 4.8e-88 328.6 287 56.1
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 8.2e-88 327.8 275 59.3
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 8.2e-88 327.8 275 58.5
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.4e-87 327.0 287 56.1
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 4.1e-87 325.5 276 58.7
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 6.9e-87 324.7 277 56.7
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 2.0e-86 323.2 308 53.9
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.6e-86 322.8 308 52.9
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 2.2e-85 319.7 289 56.1
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 2.2e-85 319.7 289 56.1
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 5.0e-85 318.5 310 53.2
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 3.2e-84 315.8 274 57.3
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 4.2e-84 315.5 312 52.6
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 1.0e-82 310.8 274 56.9
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.3e-80 303.9 317 49.5
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 2.8e-80 302.8 221 63.3
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.0e-77 294.3 278 52.5
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 3.0e-74 282.7 184 68.5
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 7.4e-73 278.1 225 59.1
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 3.7e-72 275.8 289 50.9
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.4e-71 273.9 236 58.5
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.5e-70 269.2 277 50.5
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.0e-69 267.7 235 56.2
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 9.8e-65 251.1 174 64.4
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 4.1e-63 245.7 170 66.5
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 7.5e-57 224.9 192 58.9
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 3.5e-46 189.5 194 51.0
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 1.2e-33 147.9 111 59.5
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 2.6e-33 146.7 146 53.4
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.9e-31 140.6 89 69.7
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 5.6e-28 129.0 129 51.9
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 9.5e-28 128.3 91 63.7
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 1.6e-27 127.5 315 32.4
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.2e-27 125.6 86 62.8
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.1e-26 124.8 86 65.1
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 2.4e-23 113.6 256 30.9
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 1.0e-21 108.2 75 60.0
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 3.0e-21 106.7 69 65.2
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 8.6e-21 105.1 130 46.2
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 2.4e-18 97.1 131 42.0
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 5.4e-15 85.9 64 56.2
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 4.3e-12 76.3 42 76.2
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 5.3e-10 69.3 78 47.4
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 7.9e-06 55.5 74 36.5
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 7.9e-06 55.5 74 36.5


User provided reference genes

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