Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0150 Selaginella moellendorffii HOM05D005615 ORTHO05D007558 7.4e-223 776.9 407 100.0
Mapoly0041s0099 Marchantia polymorpha HOM05D005615 ORTHO05D007558 1.7e-166 589.7 344 83.1
Sed0015751 Sechium edule HOM05D005615 ORTHO05D007558 1.0e-163 580.5 340 80.3
A03p24210 Brassica napus HOM05D005615 ORTHO05D007558 3.0e-163 578.9 344 79.7
BraA03t11630Z Brassica rapa HOM05D005615 ORTHO05D007558 3.0e-163 578.9 344 79.7
ClCG08G004320 Citrullus lanatus HOM05D005615 ORTHO05D007558 3.9e-163 578.6 340 81.2
PGR083G0205 Punica granatum HOM05D005615 ORTHO05D007558 5.1e-163 578.2 346 80.6
CsaV3_6G003770 Cucumis sativus L. HOM05D005615 ORTHO05D007558 6.6e-163 577.8 334 82.6
GSVIVG01010734001 Vitis vinifera HOM05D005615 ORTHO05D007558 1.9e-162 576.2 361 77.6
BcaB01g03390 Brassica carinata HOM05D005615 ORTHO05D007558 2.5e-162 575.9 344 79.1
Pp3c11_17440 Physcomitrium patens HOM05D005615 ORTHO05D007558 4.3e-162 575.1 329 83.9
Sp4g25460 Schrenkiella parvula HOM05D005615 ORTHO05D007558 4.3e-162 575.1 344 79.9
CARHR138440 Cardamine hirsuta HOM05D005615 ORTHO05D007558 5.6e-162 574.7 340 80.6
Pp3c1_16250 Physcomitrium patens HOM05D005615 ORTHO05D007558 7.3e-162 574.3 343 81.6
AT2G43360 Arabidopsis thaliana HOM05D005615 ORTHO05D007558 9.5e-162 573.9 344 79.7
A05p03730 Brassica napus HOM05D005615 ORTHO05D007558 9.5e-162 573.9 344 79.4
BraA05t19360Z Brassica rapa HOM05D005615 ORTHO05D007558 1.6e-161 573.2 344 79.1
Carub.0004s2582 Capsella rubella HOM05D005615 ORTHO05D007558 1.6e-161 573.2 352 77.6
BcaC02g12407 Brassica carinata HOM05D005615 ORTHO05D007558 2.1e-161 572.8 344 79.4
AL4G42040 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 2.8e-161 572.4 340 79.7
Sc13g0007050 Simmondsia chinensis HOM05D005615 ORTHO05D007558 2.8e-161 572.4 334 80.2
Thhalv10001495m.g Eutrema salsugineum HOM05D005615 ORTHO05D007558 3.6e-161 572.0 352 77.6
VMungo1127G1033 Vigna mungo HOM05D005615 ORTHO05D007558 3.6e-161 572.0 330 81.5
Cfa015769 Carpinus fangiana HOM05D005615 ORTHO05D007558 4.7e-161 571.6 355 76.1
Migut.N03069 Erythranthe guttata HOM05D005615 ORTHO05D007558 6.2e-161 571.2 348 78.2
C04p04420 Brassica napus HOM05D005615 ORTHO05D007558 8.1e-161 570.9 344 78.8
Oeu018049.1 Olea europaea HOM05D005615 ORTHO05D007558 8.1e-161 570.9 339 80.5
Glyma.11G094200 Glycine max HOM05D005615 ORTHO05D007558 1.4e-160 570.1 333 81.4
Lsat_1_v5_gn_2_52041 Lactuca sativa HOM05D005615 ORTHO05D007558 1.4e-160 570.1 344 79.4
Manes.04G040500 Manihot esculenta HOM05D005615 ORTHO05D007558 1.4e-160 570.1 351 78.3
TAR362G0587 Trochodendron aralioides HOM05D005615 ORTHO05D007558 1.8e-160 569.7 333 81.4
Aa31LG1G25060 Aethionema arabicum HOM05D005615 ORTHO05D007558 2.4e-160 569.3 344 79.4
BolC4t22075H Brassica oleracea HOM05D005615 ORTHO05D007558 2.4e-160 569.3 344 78.8
Phvul.011G023300 Phaseolus vulgaris HOM05D005615 ORTHO05D007558 2.4e-160 569.3 334 80.5
Potri.007G126400 Populus trichocarpa HOM05D005615 ORTHO05D007558 2.4e-160 569.3 346 77.7
Aqoxy2G04109 Aquilegia oxysepala HOM05D005615 ORTHO05D007558 3.1e-160 568.9 333 80.2
Glyma.12G020600 Glycine max HOM05D005615 ORTHO05D007558 4.0e-160 568.5 333 81.1
ECA238G2991 Erigeron canadensis HOM05D005615 ORTHO05D007558 5.2e-160 568.2 334 81.4
QL10p047743 Quercus lobata HOM05D005615 ORTHO05D007558 5.2e-160 568.2 355 77.7
CiPaw.02G056100 Carya illinoinensis HOM05D005615 ORTHO05D007558 6.8e-160 567.8 335 80.0
AUR62034151 Chenopodium quinoa HOM05D005615 ORTHO05D007558 6.8e-160 567.8 352 77.0
EL10Ac3g05574 Beta vulgaris HOM05D005615 ORTHO05D007558 2.0e-159 566.2 352 76.7
CANSAT78G0163 Cannabis sativa HOM05D005615 ORTHO05D007558 2.0e-159 566.2 334 79.9
Haze_00733 Corylus avellana HOM05D005615 ORTHO05D007558 2.0e-159 566.2 361 75.6
Thecc.05G003200 Theobroma cacao HOM05D005615 ORTHO05D007558 2.0e-159 566.2 351 77.5
DCAR_029917 Daucus carota HOM05D005615 ORTHO05D007558 2.6e-159 565.8 327 81.7
Lalb_Chr01g0001081 Lupinus albus HOM05D005615 ORTHO05D007558 2.6e-159 565.8 334 80.2
arahy.Tifrunner.gnm1.ann1.2A1XYJ Arachis hypogaea HOM05D005615 ORTHO05D007558 3.4e-159 565.5 333 80.5
AUR62016250 Chenopodium quinoa HOM05D005615 ORTHO05D007558 3.4e-159 565.5 329 80.2
Zm00001eb037230 Zea mays HOM05D005615 ORTHO05D007558 3.4e-159 565.5 333 80.8
MELO3C011628.2 Cucumis melo HOM05D005615 ORTHO05D007558 5.8e-159 564.7 365 76.2
Eucgr.A00054 Eucalyptus grandis HOM05D005615 ORTHO05D007558 5.8e-159 564.7 351 78.3
HanXRQChr14g0434901 Helianthus annuus HOM05D005615 ORTHO05D007558 5.8e-159 564.7 329 81.2
Os08g0540100 Oryza sativa ssp. japonica HOM05D005615 ORTHO05D007558 9.9e-159 563.9 346 78.0
Nn7g37651 Nelumbo nucifera HOM05D005615 ORTHO05D007558 1.7e-158 563.1 348 78.4
Actinidia34618 Actinidia chinensis HOM05D005615 ORTHO05D007558 2.2e-158 562.8 351 77.5
Ca_26061_v3 Cicer arietinum L. HOM05D005615 ORTHO05D007558 2.2e-158 562.8 343 78.1
Lj3g0021315 Lotus japonicus HOM05D005615 ORTHO05D007558 2.2e-158 562.8 334 79.3
MD04G1037300 Malus domestica HOM05D005615 ORTHO05D007558 2.2e-158 562.8 333 79.6
Hund03143 Selenicereus undatus HOM05D005615 ORTHO05D007558 2.2e-158 562.8 329 80.9
TWI36G1239 Tripterygium wilfordii HOM05D005615 ORTHO05D007558 2.2e-158 562.8 350 77.4
ATR0743G064 Amborella trichopoda HOM05D005615 ORTHO05D007558 2.9e-158 562.4 355 76.9
Rhsim09G0030100 Rhododendron simsii HOM05D005615 ORTHO05D007558 2.9e-158 562.4 351 78.1
MSTRG.22029 Avicennia marina HOM05D005615 ORTHO05D007558 3.8e-158 562.0 330 81.5
PSO017G2630 Papaver somniferum HOM05D005615 ORTHO05D007558 3.8e-158 562.0 356 74.4
Sabra07G0102500 Salix brachista HOM05D005615 ORTHO05D007558 3.8e-158 562.0 350 75.7
SGA_v2.0_scaffold283G46961 Striga asiatica HOM05D005615 ORTHO05D007558 3.8e-158 562.0 329 80.9
RcHm_v2.0_Chr4g0408131 Rosa chinensis HOM05D005615 ORTHO05D007558 4.9e-158 561.6 332 79.2
SEGI_32939 Sequoiadendron giganteum HOM05D005615 ORTHO05D007558 6.4e-158 561.2 353 75.9
Duzib093G1513 Durio zibethinus HOM05D005615 ORTHO05D007558 1.4e-157 560.1 333 79.6
FAN17G1451 Fragaria x ananassa HOM05D005615 ORTHO05D007558 1.4e-157 560.1 337 78.0
Nitab4.5_0002368g0110 Nicotiana tabacum HOM05D005615 ORTHO05D007558 1.4e-157 560.1 339 78.8
Nitab4.5_0010690g0020 Nicotiana tabacum HOM05D005615 ORTHO05D007558 1.4e-157 560.1 339 78.8
PSO675G8272 Papaver somniferum HOM05D005615 ORTHO05D007558 1.4e-157 560.1 349 75.6
Potri.017G033300 Populus trichocarpa HOM05D005615 ORTHO05D007558 1.4e-157 560.1 355 75.2
PGSC0003DMG400026904 Solanum tuberosum HOM05D005615 ORTHO05D007558 1.4e-157 560.1 339 78.2
Eucgr.A00256 Eucalyptus grandis HOM05D005615 ORTHO05D007558 1.9e-157 559.7 352 78.1
Sabra17G0020900 Salix brachista HOM05D005615 ORTHO05D007558 1.9e-157 559.7 355 74.9
unitig_736.g22473 Utricularia gibba HOM05D005615 ORTHO05D007558 1.9e-157 559.7 342 78.1
THA.LOC104803617 Tarenaya hassleriana HOM05D005615 ORTHO05D007558 2.4e-157 559.3 334 79.0
Medtr4g076870 Medicago truncatula HOM05D005615 ORTHO05D007558 3.2e-157 558.9 333 79.3
Ciclev10020553m.g Citrus clementina HOM05D005615 ORTHO05D007558 4.2e-157 558.5 351 76.9
Lalb_Chr03g0024511 Lupinus albus HOM05D005615 ORTHO05D007558 4.2e-157 558.5 337 78.6
Cc03_g13240 Coffea canephora HOM05D005615 ORTHO05D007558 5.4e-157 558.1 328 81.1
Solyc06g073470.3 Solanum lycopersicum HOM05D005615 ORTHO05D007558 5.4e-157 558.1 339 78.2
Sopen06g029830 Solanum pennellii HOM05D005615 ORTHO05D007558 5.4e-157 558.1 339 78.2
Atru.chr3.1563 Acer truncatum HOM05D005615 ORTHO05D007558 7.1e-157 557.8 330 79.7
Atru.chr3.1585 Acer truncatum HOM05D005615 ORTHO05D007558 7.1e-157 557.8 330 79.7
Dinv44241 Davidia involucrata HOM05D005615 ORTHO05D007558 7.1e-157 557.8 351 76.9
Gohir.D01G221300 Gossypium hirsutum HOM05D005615 ORTHO05D007558 1.2e-156 557.0 348 77.3
Gorai.002G267900 Gossypium raimondii HOM05D005615 ORTHO05D007558 1.2e-156 557.0 348 77.3
Dinv22646 Davidia involucrata HOM05D005615 ORTHO05D007558 6.0e-156 554.7 330 80.0
TPR.G13757 Trifolium pratense HOM05D005615 ORTHO05D007558 7.8e-156 554.3 333 78.7
Psat7g172600 Pisum sativum HOM05D005615 ORTHO05D007558 1.0e-155 553.9 329 79.0
Gohir.A01G231200 Gossypium hirsutum HOM05D005615 ORTHO05D007558 2.3e-155 552.7 332 79.8
CDE07G0588 Ceratophyllum demersum HOM05D005615 ORTHO05D007558 3.9e-155 552.0 333 78.1
AagrBONN_evm.TU.Sc2ySwM_362.1417 Anthoceros agrestis HOM05D003321 ORTHO05D005161 2.4e-152 542.7 336 78.6
arahy.Tifrunner.gnm1.ann1.VQKS2I Arachis hypogaea HOM05D005615 ORTHO05D007558 2.6e-151 539.3 333 77.8
MBI11_g35028_MAGBIO Magnolia biondii HOM05D005615 ORTHO05D007558 1.5e-143 513.5 334 75.4
AagrBONN_evm.TU.Sc2ySwM_344.4725 Anthoceros agrestis HOM05D005615 ORTHO05D007558 3.8e-142 508.8 329 73.3
SGA_v2.0_scaffold12G06187 Striga asiatica HOM05D005615 ORTHO05D007558 4.9e-142 508.4 348 72.1
Lj6A60G37 Lonicera japonica HOM05D005615 ORTHO05D007558 5.4e-141 505.0 292 82.2
Ciclev10024495m.g Citrus clementina HOM05D005615 ORTHO05D007558 1.6e-140 503.4 351 70.7
BcaC01g05236 Brassica carinata HOM05D005615 ORTHO05D007558 3.3e-138 495.7 348 71.0
BolC3t15243H Brassica oleracea HOM05D005615 ORTHO05D007558 1.3e-137 493.8 347 70.0
Ciclev10024062m.g Citrus clementina HOM05D005615 ORTHO05D007558 1.4e-120 437.2 330 67.3
Cpa.g.sc71.17 Carica papaya HOM05D005615 ORTHO05D007558 2.1e-116 423.3 253 77.5
Prupe.1G186700 Prunus persica HOM05D005615 ORTHO05D007558 2.1e-116 423.3 247 82.6
HPP92_002777 Vanilla planifolia HOM05D005615 ORTHO05D007558 5.1e-115 418.7 259 76.1
FvH4_4g11460 Fragaria vesca HOM05D005615 ORTHO05D007558 3.3e-114 416.0 248 77.0
CAN.G65.188 Capsicum annuum HOM05D005615 ORTHO05D007558 3.1e-112 409.5 253 77.5
HPP92_028241 Vanilla planifolia HOM05D005615 ORTHO05D001525 3.6e-108 396.0 310 65.8
MCO13G117 Micromonas commoda HOM05D005615 ORTHO05D007558 4.4e-106 389.0 320 60.0
Cre06.g261150 Chlamydomonas reinhardtii HOM05D005615 ORTHO05D007558 7.4e-106 388.3 337 57.9
Zm00001eb198320 Zea mays HOM05D005615 ORTHO05D007558 2.6e-90 336.7 198 81.8
COL.COLO4_14419 Corchorus olitorius HOM05D005615 ORTHO05D007558 4.4e-90 335.9 216 76.9
FAN07G1681 Fragaria x ananassa HOM05D005615 ORTHO05D007558 9.7e-90 334.7 200 76.0
Peaxi162Scf00375g00079 Petunia axillaris HOM05D005615 ORTHO05D007558 1.0e-86 324.7 217 74.7
Haze_27367 Corylus avellana HOM05D005615 ORTHO05D007558 2.0e-79 300.4 297 50.2
vmacro00603 Vaccinium macrocarpon HOM05D005615 ORTHO05D007558 1.4e-67 261.2 234 56.8
CBR_g54828 Chara braunii HOM05D005615 ORTHO05D007558 8.1e-52 208.8 136 71.3
AL3G36550 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 2.6e-50 203.8 134 76.1
AL4G42060 Arabidopsis lyrata HOM05D005615 ORTHO05D007558 3.1e-43 180.3 201 50.7
Actinidia27060 Actinidia chinensis HOM05D005615 ORTHO05D007558 9.9e-42 175.3 97 80.4
CBR_g54834 Chara braunii HOM05D005615 ORTHO05D007558 1.4e-40 171.4 104 79.8
CBR_g54836 Chara braunii HOM05D005615 ORTHO05D000002 4.6e-31 139.8 82 79.3
Cpa.g.sc71.16 Carica papaya HOM05D005615 ORTHO05D007558 3.6e-28 130.2 77 84.4
HPP92_002776 Vanilla planifolia HOM05D005615 ORTHO05D007558 6.0e-23 112.8 64 84.4
Cpa.g.c45785 Carica papaya HOM05D005615 ORTHO05D007558 2.3e-22 110.9 60 78.3
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 2.3e-22 110.9 74 73.0
CDE04G1318 Ceratophyllum demersum HOM05D005615 ORTHO05D007558 6.7e-22 109.4 75 72.0
Zm00001eb285620 Zea mays HOM05D001443 ORTHO05D001352 4.9e-17 93.2 68 66.2
SalBow8G4084 Salvia bowleyana HOM05D005615 ORTHO05D007558 1.3e-14 85.1 54 72.2
Eucgr.A00259 Eucalyptus grandis HOM05D005615 ORTHO05D007558 1.5e-13 81.6 54 70.4


User provided reference genes

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