Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.1e-226 789.6 388 100.0
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 4.1e-138 495.4 396 61.6
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.4e-130 470.3 367 60.5
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.6e-129 465.3 384 59.4
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.6e-129 465.3 384 59.4
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 4.6e-129 465.3 385 60.8
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 7.8e-129 464.5 382 56.5
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 7.8e-129 464.5 383 59.5
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.0e-128 464.2 387 58.7
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 3.0e-128 462.6 384 59.4
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.0e-128 462.6 400 58.2
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 8.6e-128 461.1 384 59.6
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 8.6e-128 461.1 400 58.0
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.5e-127 459.5 400 57.0
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.3e-127 458.8 400 56.8
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.6e-126 456.8 399 55.4
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.6e-126 456.8 400 56.5
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.6e-126 456.8 400 56.5
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 2.8e-126 456.1 408 55.1
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.8e-126 456.1 398 56.3
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 3.6e-126 455.7 384 57.6
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 6.2e-126 454.9 384 58.3
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 6.2e-126 454.9 383 58.5
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.0e-126 454.5 400 56.2
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.8e-125 453.4 400 56.2
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.8e-125 453.4 384 58.1
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 1.8e-125 453.4 384 58.1
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 1.8e-125 453.4 401 57.1
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.3e-125 453.0 410 56.8
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.3e-125 453.0 409 55.7
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.1e-125 452.6 405 55.6
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 5.2e-125 451.8 383 57.4
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 8.9e-125 451.1 385 58.4
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 8.9e-125 451.1 383 57.2
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.2e-124 450.7 384 57.8
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.0e-124 449.9 416 55.5
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 2.6e-124 449.5 383 57.4
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.6e-124 449.5 382 57.3
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.6e-124 449.5 416 55.5
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 3.4e-124 449.1 382 57.3
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 4.4e-124 448.7 404 55.9
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 5.8e-124 448.4 405 55.3
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 5.8e-124 448.4 384 56.2
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 9.8e-124 447.6 385 56.9
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.3e-123 447.2 406 55.2
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 1.7e-123 446.8 384 57.3
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.2e-123 446.4 407 56.3
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 2.9e-123 446.0 382 57.6
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 3.7e-123 445.7 415 54.9
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 4.9e-123 445.3 408 56.6
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 6.4e-123 444.9 382 57.3
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 8.3e-123 444.5 407 55.0
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 8.3e-123 444.5 409 55.5
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 8.3e-123 444.5 406 55.7
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.1e-122 444.1 385 56.4
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.4e-122 443.7 409 54.8
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 4.1e-122 442.2 385 56.9
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 4.1e-122 442.2 385 56.9
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 4.1e-122 442.2 403 56.1
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 5.4e-122 441.8 409 54.5
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 9.2e-122 441.0 380 56.8
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.6e-121 440.3 406 56.2
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 2.1e-121 439.9 405 55.3
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.7e-121 439.5 385 57.7
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 6.0e-121 438.3 389 55.0
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 7.8e-121 438.0 414 52.9
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.0e-120 437.6 377 57.3
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 1.0e-120 437.6 407 55.8
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.3e-120 437.2 409 55.7
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.3e-120 437.2 406 55.4
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.7e-120 436.8 391 55.0
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.7e-120 436.8 391 56.3
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 5.1e-120 435.3 408 55.9
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 5.1e-120 435.3 366 59.0
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 5.1e-120 435.3 391 55.2
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 5.1e-120 435.3 391 55.2
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 5.1e-120 435.3 391 54.7
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 8.6e-120 434.5 405 53.3
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 8.6e-120 434.5 405 53.3
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 1.1e-119 434.1 386 54.7
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 1.1e-119 434.1 391 55.5
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 1.5e-119 433.7 410 55.6
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 1.5e-119 433.7 395 56.5
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 2.5e-119 433.0 385 56.6
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 9.5e-119 431.0 389 55.8
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 1.6e-118 430.3 382 56.3
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.6e-118 430.3 382 56.3
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.6e-118 430.3 403 54.3
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 4.7e-118 428.7 397 52.6
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 8.1e-118 427.9 405 54.8
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 8.1e-118 427.9 405 54.8
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 8.1e-118 427.9 405 54.8
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 1.8e-117 426.8 416 52.4
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 1.8e-117 426.8 383 54.8
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.8e-117 426.8 389 55.5
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 3.1e-117 426.0 391 54.5
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 4.0e-117 425.6 391 55.0
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 6.8e-117 424.9 406 54.2
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 8.9e-117 424.5 420 52.1
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.2e-116 424.1 421 53.0
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.5e-116 423.7 404 53.2
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.5e-116 423.7 381 57.2
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.5e-116 423.7 381 57.2
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.5e-116 423.7 381 57.2
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.5e-116 423.7 416 51.2
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 4.4e-116 422.2 385 56.1
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 9.9e-116 421.0 386 54.9
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 2.2e-115 419.9 380 56.1
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 2.2e-115 419.9 363 57.0
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 3.7e-115 419.1 385 53.0
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 4.9e-115 418.7 389 54.8
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 8.3e-115 417.9 389 53.7
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 8.3e-115 417.9 389 53.7
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.4e-114 417.2 411 51.8
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 5.4e-114 415.2 432 50.5
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 9.2e-114 414.5 332 61.1
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 2.1e-113 413.3 384 54.9
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 1.3e-112 410.6 397 50.9
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 2.5e-111 406.4 370 54.9
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 1.2e-110 404.1 420 51.4
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 1.3e-107 394.0 367 54.8
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 2.7e-105 386.3 382 51.8
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 5.1e-104 382.1 397 51.6
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 5.6e-103 378.6 361 53.5
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 8.1e-102 374.8 366 52.5
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 2.4e-101 373.2 386 50.0
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.2e-100 370.9 383 49.3
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 2.0e-100 370.2 400 50.0
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 3.4e-92 342.8 386 46.1
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 3.9e-80 302.8 274 55.1
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 5.7e-47 192.6 228 44.7
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 4.0e-40 169.9 194 49.0
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.5e-39 167.9 279 37.6
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 2.0e-39 167.5 166 50.6
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 7.5e-39 165.6 172 50.6
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.8e-37 161.0 296 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 2.6e-23 114.0 193 35.2
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 1.2e-20 105.1 76 61.8
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.1e-18 98.6 101 50.5
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 7.3e-18 95.9 90 54.4
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.0e-15 87.8 120 42.5
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 2.7e-12 77.4 115 48.7
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 6.8e-08 62.8 59 44.1


User provided reference genes

Program Settings