Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 1.6e-49 199.1 103 100.0
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 2.7e-20 102.1 97 52.6
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 1.5e-18 96.3 97 49.5
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 1.9e-18 95.9 95 49.5
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 2.1e-17 92.4 97 46.4
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 2.8e-17 92.0 101 44.6
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 6.2e-17 90.9 100 42.0
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 1.4e-16 89.7 99 43.4
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 6.9e-16 87.4 97 44.3
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 1.5e-15 86.3 97 42.3
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 1.5e-15 86.3 96 43.8
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 2.0e-15 85.9 94 42.6
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 2.0e-15 85.9 97 42.3
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 2.0e-15 85.9 101 42.6
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 2.6e-15 85.5 97 43.3
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 2.6e-15 85.5 97 43.3
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 2.6e-15 85.5 97 43.3
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 2.6e-15 85.5 94 44.7
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 4.4e-15 84.7 94 43.6
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 4.4e-15 84.7 97 42.3
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 4.4e-15 84.7 98 41.8
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 4.4e-15 84.7 94 44.7
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 7.6e-15 84.0 97 42.3
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 7.6e-15 84.0 97 42.3
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 7.6e-15 84.0 94 41.5
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 7.6e-15 84.0 97 41.2
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 7.6e-15 84.0 97 42.3
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 7.6e-15 84.0 100 41.0
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 9.9e-15 83.6 93 44.1
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 9.9e-15 83.6 97 40.2
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 9.9e-15 83.6 94 42.6
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 9.9e-15 83.6 97 41.2
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 1.3e-14 83.2 97 42.3
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 1.7e-14 82.8 94 42.6
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 2.2e-14 82.4 97 40.2
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 2.2e-14 82.4 97 41.2
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 2.2e-14 82.4 97 41.2
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 2.2e-14 82.4 97 41.2
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 2.2e-14 82.4 96 43.8
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 2.2e-14 82.4 97 42.3
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 2.2e-14 82.4 97 40.2
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 2.9e-14 82.0 97 40.2
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 2.9e-14 82.0 97 41.2
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.8e-14 81.6 100 39.0
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 3.8e-14 81.6 100 39.0
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 3.8e-14 81.6 97 41.2
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 4.9e-14 81.3 100 39.0
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 4.9e-14 81.3 97 40.2
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 6.4e-14 80.9 100 39.0
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 6.4e-14 80.9 94 39.4
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 6.4e-14 80.9 97 40.2
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 6.4e-14 80.9 97 38.1
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 8.4e-14 80.5 97 40.2
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 1.1e-13 80.1 97 39.2
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 1.4e-13 79.7 94 39.4
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 1.4e-13 79.7 95 37.9
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 1.4e-13 79.7 97 40.2
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 1.4e-13 79.7 97 40.2
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 1.9e-13 79.3 94 41.5
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 1.9e-13 79.3 97 40.2
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 2.4e-13 79.0 98 39.8
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 2.4e-13 79.0 97 38.1
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 2.4e-13 79.0 97 39.2
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 2.4e-13 79.0 100 38.0
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 3.2e-13 78.6 96 39.6
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 4.2e-13 78.2 98 35.7
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.4e-13 77.8 94 40.4
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.4e-13 77.8 94 40.4
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 7.1e-13 77.4 100 37.0
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 1.6e-12 76.3 95 37.9
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 1.6e-12 76.3 95 37.9
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 2.1e-12 75.9 97 38.1
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 2.1e-12 75.9 97 38.1
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 3.5e-12 75.1 95 37.9
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 6.0e-12 74.3 94 37.2
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 7.8e-12 73.9 95 37.9
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 1.0e-11 73.6 97 37.1
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 2.3e-11 72.4 93 39.8
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 2.3e-11 72.4 93 38.7
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 2.3e-11 72.4 98 35.7
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 3.0e-11 72.0 84 42.9
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 3.0e-11 72.0 80 43.8
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 3.9e-11 71.6 100 37.0
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 1.1e-10 70.1 94 36.2
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 1.5e-10 69.7 90 34.4
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 4.3e-10 68.2 90 41.1
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.8e-09 65.5 95 34.7
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 1.1e-08 63.5 83 38.6
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 1.4e-08 63.2 72 41.7
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 1.4e-08 63.2 72 40.3
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 1.8e-08 62.8 72 40.3
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 5.3e-08 61.2 79 39.2
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 6.9e-08 60.8 97 32.0
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 9.0e-08 60.5 72 37.5
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 9.0e-08 60.5 72 37.5
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 1.2e-07 60.1 97 33.0
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 1.5e-07 59.7 97 30.9
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 1.5e-07 59.7 58 44.8
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 2.0e-07 59.3 97 33.0
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 4.5e-07 58.2 57 47.4
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 7.6e-07 57.4 58 43.1
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 7.6e-07 57.4 58 43.1
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 7.6e-07 57.4 100 31.0
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 7.6e-07 57.4 52 48.1
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 7.6e-07 57.4 52 48.1
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 7.6e-07 57.4 88 34.1
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 1.3e-06 56.6 52 48.1
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.3e-06 56.6 52 48.1
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 1.7e-06 56.2 58 43.1
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 1.7e-06 56.2 58 43.1
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 1.7e-06 56.2 58 43.1
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 1.7e-06 56.2 58 43.1
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 2.2e-06 55.8 58 41.4
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 2.2e-06 55.8 97 30.9
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 2.9e-06 55.5 58 43.1
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 2.9e-06 55.5 56 48.2
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.9e-06 55.5 56 48.2
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 3.8e-06 55.1 58 41.4
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 3.8e-06 55.1 58 41.4
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 6.4e-06 54.3 69 39.1
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 8.4e-06 53.9 67 41.8


User provided reference genes

Program Settings