Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0115 Selaginella moellendorffii HOM05D007268 ORTHO05D009152 5.2e-50 200.7 97 100.0
Pp3c2_29020 Physcomitrium patens HOM05D007268 ORTHO05D009152 1.2e-25 119.8 97 60.8
Mapoly0012s0147 Marchantia polymorpha HOM05D007268 ORTHO05D009152 1.3e-24 116.3 102 59.8
SEGI_36221 Sequoiadendron giganteum HOM05D007268 ORTHO05D009152 7.1e-23 110.5 96 56.2
Glyma.13G219500 Glycine max HOM05D007268 ORTHO05D009152 1.2e-22 109.8 102 52.9
Medtr2g019100 Medicago truncatula HOM05D007268 ORTHO05D009152 1.2e-22 109.8 100 51.0
TPR.G26254 Trifolium pratense HOM05D007268 ORTHO05D009152 1.6e-22 109.4 100 51.0
Lsat_1_v5_gn_7_27661 Lactuca sativa HOM05D007268 ORTHO05D009152 2.7e-22 108.6 92 53.3
Dinv32234 Davidia involucrata HOM05D007268 ORTHO05D009152 3.5e-22 108.2 96 55.2
MBI02_g20985_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 3.5e-22 108.2 87 60.9
Psat1g188600 Pisum sativum HOM05D007268 ORTHO05D009152 4.6e-22 107.8 101 51.5
Hund21552 Selenicereus undatus HOM05D007268 ORTHO05D009152 4.6e-22 107.8 99 51.5
Ah.04g158630 Amaranthus hybridus HOM05D007268 ORTHO05D009152 7.9e-22 107.1 89 56.2
AT4G18372 Arabidopsis thaliana HOM05D007268 ORTHO05D009152 7.9e-22 107.1 87 54.0
AL7G36000 Arabidopsis lyrata HOM05D007268 ORTHO05D009152 1.0e-21 106.7 87 54.0
Carub.0007s2291 Capsella rubella HOM05D007268 ORTHO05D009152 1.0e-21 106.7 87 55.2
Ca_00530_v3 Cicer arietinum L. HOM05D007268 ORTHO05D009152 1.3e-21 106.3 102 49.0
Thhalv10026609m.g Eutrema salsugineum HOM05D007268 ORTHO05D009152 1.3e-21 106.3 87 54.0
BcaC06g30594 Brassica carinata HOM05D007268 ORTHO05D009152 1.8e-21 105.9 87 54.0
BcaC09g51527 Brassica carinata HOM05D007268 ORTHO05D009152 1.8e-21 105.9 87 54.0
BcaNung00009 Brassica carinata HOM05D007268 ORTHO05D009152 1.8e-21 105.9 87 54.0
A01p10290 Brassica napus HOM05D007268 ORTHO05D009152 1.8e-21 105.9 87 54.0
C01p12240 Brassica napus HOM05D007268 ORTHO05D009152 1.8e-21 105.9 87 54.0
BolC1t01200H Brassica oleracea HOM05D007268 ORTHO05D009152 1.8e-21 105.9 87 54.0
BraA01t00976Z Brassica rapa HOM05D007268 ORTHO05D009152 1.8e-21 105.9 87 54.0
CARHR225150 Cardamine hirsuta HOM05D007268 ORTHO05D009152 1.8e-21 105.9 87 54.0
Prupe.4G083100 Prunus persica HOM05D007268 ORTHO05D009152 1.8e-21 105.9 91 54.9
Sabra15G0149200 Salix brachista HOM05D007268 ORTHO05D009152 1.8e-21 105.9 87 55.2
Aa31LG6G1080 Aethionema arabicum HOM05D007268 ORTHO05D009152 2.3e-21 105.5 87 54.0
Aqoxy4G02868 Aquilegia oxysepala HOM05D007268 ORTHO05D009152 2.3e-21 105.5 99 51.5
Manes.17G072200 Manihot esculenta HOM05D007268 ORTHO05D009152 2.3e-21 105.5 96 51.0
Sp7g15690 Schrenkiella parvula HOM05D007268 ORTHO05D009152 2.3e-21 105.5 83 56.6
MD05G1281500 Malus domestica HOM05D007268 ORTHO05D009152 3.0e-21 105.1 90 55.6
ATR0618G449 Amborella trichopoda HOM05D007268 ORTHO05D009152 3.9e-21 104.8 83 61.4
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 3.9e-21 104.8 96 50.0
PGR031G1097 Punica granatum HOM05D007268 ORTHO05D009152 3.9e-21 104.8 96 52.1
THA.LOC104798395 Tarenaya hassleriana HOM05D007268 ORTHO05D009152 3.9e-21 104.8 87 54.0
ECA236G4633 Erigeron canadensis HOM05D007268 ORTHO05D009152 5.1e-21 104.4 99 49.5
Sc24g0001710 Simmondsia chinensis HOM05D007268 ORTHO05D009152 6.7e-21 104.0 89 55.1
PGSC0003DMG400029871 Solanum tuberosum HOM05D007268 ORTHO05D009152 6.7e-21 104.0 95 50.5
unitig_92.g28163 Utricularia gibba HOM05D007268 ORTHO05D009152 6.7e-21 104.0 97 50.5
BcaC06g30591 Brassica carinata HOM05D007268 ORTHO05D009152 8.7e-21 103.6 87 51.7
A03p51230 Brassica napus HOM05D007268 ORTHO05D009152 8.7e-21 103.6 88 51.1
BraA03t14206Z Brassica rapa HOM05D007268 ORTHO05D009152 8.7e-21 103.6 88 51.1
Lalb_Chr18g0055321 Lupinus albus HOM05D007268 ORTHO05D009152 8.7e-21 103.6 87 56.3
Potri.015G138100 Populus trichocarpa HOM05D007268 ORTHO05D009152 8.7e-21 103.6 89 53.9
BcaNung02699 Brassica carinata HOM05D007268 ORTHO05D009152 1.1e-20 103.2 87 51.7
C07p49660 Brassica napus HOM05D007268 ORTHO05D009152 1.1e-20 103.2 87 51.7
BolC7t45467H Brassica oleracea HOM05D007268 ORTHO05D009152 1.1e-20 103.2 87 51.7
FAN25G0109 Fragaria x ananassa HOM05D007268 ORTHO05D009152 1.1e-20 103.2 96 49.0
SGA_v2.0_scaffold1G00193 Striga asiatica HOM05D007268 ORTHO05D009152 1.1e-20 103.2 90 54.4
Cfa000925 Carpinus fangiana HOM05D007268 ORTHO05D009152 1.5e-20 102.8 87 55.2
Atru.chr4.1816 Acer truncatum HOM05D007268 ORTHO05D009152 1.9e-20 102.4 97 48.5
MSTRG.7499 Avicennia marina HOM05D007268 ORTHO05D009152 1.9e-20 102.4 87 55.2
Ciclev10017240m.g Citrus clementina HOM05D007268 ORTHO05D009152 1.9e-20 102.4 98 46.9
Duzib235G0597 Durio zibethinus HOM05D007268 ORTHO05D009152 1.9e-20 102.4 87 54.0
Eucgr.E02425 Eucalyptus grandis HOM05D007268 ORTHO05D009152 1.9e-20 102.4 88 54.5
Gohir.A10G042300 Gossypium hirsutum HOM05D007268 ORTHO05D009152 1.9e-20 102.4 87 56.3
Thecc.06G148000 Theobroma cacao HOM05D007268 ORTHO05D009152 1.9e-20 102.4 87 54.0
Atru.chr10.1171 Acer truncatum HOM05D007268 ORTHO05D009152 2.5e-20 102.1 97 47.4
AUR62006739 Chenopodium quinoa HOM05D007268 ORTHO05D009152 2.5e-20 102.1 89 52.8
Gorai.011G045800 Gossypium raimondii HOM05D007268 ORTHO05D009152 2.5e-20 102.1 85 57.6
CSS0030281 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 3.3e-20 101.7 87 55.2
Duzib160G0929 Durio zibethinus HOM05D007268 ORTHO05D009152 3.3e-20 101.7 87 52.9
RcHm_v2.0_Chr5g0014441 Rosa chinensis HOM05D007268 ORTHO05D009152 3.3e-20 101.7 88 52.3
Rhsim13G0115400 Rhododendron simsii HOM05D007268 ORTHO05D009152 4.3e-20 101.3 97 51.5
Solyc08g048540.2 Solanum lycopersicum HOM05D007268 ORTHO05D009152 4.3e-20 101.3 94 50.0
Sopen08g010950 Solanum pennellii HOM05D007268 ORTHO05D009152 4.3e-20 101.3 94 50.0
vmacro03337 Vaccinium macrocarpon HOM05D007268 ORTHO05D009152 5.6e-20 100.9 99 49.5
CSS0021934 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 7.4e-20 100.5 87 54.0
Gohir.D10G043200 Gossypium hirsutum HOM05D007268 ORTHO05D009152 7.4e-20 100.5 85 56.5
Phvul.006G166200 Phaseolus vulgaris HOM05D007268 ORTHO05D009152 7.4e-20 100.5 89 52.8
QL05p055849 Quercus lobata HOM05D007268 ORTHO05D009152 7.4e-20 100.5 87 55.2
Os06g0677600 Oryza sativa ssp. japonica HOM05D007268 ORTHO05D009152 9.6e-20 100.1 94 50.0
Nn3g20236 Nelumbo nucifera HOM05D007268 ORTHO05D009152 1.3e-19 99.8 96 50.0
Sed0026056 Sechium edule HOM05D007268 ORTHO05D009152 1.6e-19 99.4 100 49.0
TWI53G0467 Tripterygium wilfordii HOM05D007268 ORTHO05D009152 1.6e-19 99.4 87 51.7
Oeu030940.1 Olea europaea HOM05D007268 ORTHO05D009152 2.1e-19 99.0 87 51.7
PSO541G1787 Papaver somniferum HOM05D007268 ORTHO05D009152 2.1e-19 99.0 98 50.0
ClCG03G006700 Citrullus lanatus HOM05D007268 ORTHO05D009152 2.8e-19 98.6 109 45.9
CsaV3_1G004630 Cucumis sativus L. HOM05D007268 ORTHO05D009152 2.8e-19 98.6 109 45.9
Zm00001eb273860 Zea mays HOM05D007268 ORTHO05D009152 2.8e-19 98.6 85 57.6
Actinidia32339 Actinidia chinensis HOM05D007268 ORTHO05D009152 3.7e-19 98.2 87 51.7
CAN.G42.16 Capsicum annuum HOM05D007268 ORTHO05D009152 3.7e-19 98.2 95 47.4
Zm00001eb224700 Zea mays HOM05D007268 ORTHO05D009152 4.8e-19 97.8 89 55.1
unitig_37.g12097 Utricularia gibba HOM05D007268 ORTHO05D009152 8.2e-19 97.1 87 51.7
CiPaw.09G121900 Carya illinoinensis HOM05D007268 ORTHO05D009152 1.1e-18 96.7 85 52.9
DCAR_003898 Daucus carota HOM05D007268 ORTHO05D009152 1.1e-18 96.7 94 50.0
GSVIVG01035542001 Vitis vinifera HOM05D007268 ORTHO05D009152 1.8e-18 95.9 76 59.2
Migut.M00895 Erythranthe guttata HOM05D007268 ORTHO05D009152 3.1e-18 95.1 87 50.6
CANSAT21G2169 Cannabis sativa HOM05D007268 ORTHO05D009152 5.3e-18 94.4 94 45.7
HPP92_004157 Vanilla planifolia HOM05D007268 ORTHO05D009152 5.3e-18 94.4 73 60.3
CAN.G500.67 Capsicum annuum HOM05D007268 ORTHO05D009152 9.0e-18 93.6 95 46.3
MBI02_g43299_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 9.0e-18 93.6 77 58.4
SalBow8G1886 Salvia bowleyana HOM05D007268 ORTHO05D009152 1.2e-17 93.2 77 55.8
EL10Ac4g09469 Beta vulgaris HOM05D007268 ORTHO05D009152 2.0e-17 92.4 77 54.5
Cc09_g08780 Coffea canephora HOM05D007268 ORTHO05D009152 2.0e-17 92.4 76 55.3
CiPaw.10G090400 Carya illinoinensis HOM05D007268 ORTHO05D009152 3.4e-17 91.7 81 53.1
CBR_g29441 Chara braunii HOM05D007268 ORTHO05D009152 3.4e-17 91.7 119 42.9
HanXRQChr04g0115721 Helianthus annuus HOM05D007268 ORTHO05D009152 3.4e-17 91.7 76 56.6
FAN16G0810 Fragaria x ananassa HOM05D007268 ORTHO05D009152 4.5e-17 91.3 83 49.4
Solyc08g048520.1 Solanum lycopersicum HOM05D007268 ORTHO05D009152 9.3e-15 83.6 94 45.7
FAN21G3321 Fragaria x ananassa HOM05D007268 ORTHO05D009152 3.0e-13 78.6 77 46.8
SHI24845 Sapria himalayana HOM05D007268 ORTHO05D009152 8.7e-13 77.0 71 47.9
PRCOL_00005812 Prasinoderma coloniale HOM05D007268 ORTHO05D009152 2.5e-12 75.5 100 46.0
arahy.Tifrunner.gnm1.ann1.H0S66A Arachis hypogaea HOM05D007268 ORTHO05D009152 3.3e-12 75.1 84 45.2
MCO15G665 Micromonas commoda HOM05D007268 ORTHO05D009152 1.4e-07 59.7 92 34.8


User provided reference genes

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