Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.1e-96 356.7 180 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 2.6e-71 272.3 180 72.2
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 5.9e-71 271.2 179 73.2
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.9e-66 256.1 180 65.6
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.9e-66 256.1 180 66.1
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 2.5e-66 255.8 180 65.6
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 2.5e-66 255.8 180 65.6
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 2.5e-66 255.8 180 65.6
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 2.5e-66 255.8 180 65.6
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 2.5e-66 255.8 180 66.1
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 4.3e-66 255.0 180 65.0
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 5.7e-66 254.6 180 65.0
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 5.7e-66 254.6 180 65.0
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 5.7e-66 254.6 180 65.0
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 5.7e-66 254.6 180 65.0
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 5.7e-66 254.6 180 65.0
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 7.4e-66 254.2 180 65.0
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 2.8e-65 252.3 180 64.4
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 2.8e-65 252.3 180 65.0
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 6.3e-65 251.1 180 64.4
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 1.4e-64 250.0 180 63.3
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 2.4e-64 249.2 180 64.4
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.4e-64 249.2 179 64.8
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.4e-64 249.2 179 64.2
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 3.1e-64 248.8 180 65.6
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 3.1e-64 248.8 180 63.3
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 5.3e-64 248.1 180 65.6
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 9.1e-64 247.3 177 64.4
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 9.1e-64 247.3 177 64.4
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 9.1e-64 247.3 177 64.4
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 1.2e-63 246.9 180 63.9
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 1.2e-63 246.9 177 63.8
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.2e-63 246.9 180 63.3
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 1.2e-63 246.9 180 64.4
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 1.2e-63 246.9 180 64.4
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.2e-63 246.9 180 63.9
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.5e-63 246.5 180 64.4
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 2.0e-63 246.1 177 63.3
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 2.0e-63 246.1 180 63.3
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 2.6e-63 245.7 180 64.4
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.6e-63 245.7 180 63.3
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 2.6e-63 245.7 177 65.0
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 3.4e-63 245.4 180 63.3
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 4.5e-63 245.0 179 66.5
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 4.5e-63 245.0 180 62.8
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 4.5e-63 245.0 180 63.3
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 4.5e-63 245.0 177 66.7
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 5.9e-63 244.6 177 65.0
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 5.9e-63 244.6 177 62.7
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 7.7e-63 244.2 179 63.7
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 7.7e-63 244.2 177 63.8
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 1.0e-62 243.8 177 63.8
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.3e-62 243.4 180 62.8
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 1.7e-62 243.0 180 62.2
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 2.2e-62 242.7 179 62.6
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 2.2e-62 242.7 179 62.6
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.2e-62 242.7 180 61.7
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 2.2e-62 242.7 177 62.1
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 2.2e-62 242.7 180 63.9
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 5.0e-62 241.5 180 63.3
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 5.0e-62 241.5 177 64.4
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 8.5e-62 240.7 180 63.3
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 8.5e-62 240.7 180 61.7
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.1e-61 240.4 180 62.2
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.1e-61 240.4 180 62.2
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 1.1e-61 240.4 180 62.2
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.4e-61 240.0 180 61.7
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 1.4e-61 240.0 180 62.8
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.4e-61 240.0 180 61.1
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 1.9e-61 239.6 180 61.7
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 2.5e-61 239.2 180 62.2
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 3.2e-61 238.8 179 62.6
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 3.2e-61 238.8 177 62.7
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 3.2e-61 238.8 180 63.3
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 3.2e-61 238.8 177 63.3
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 4.2e-61 238.4 180 61.1
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 7.2e-61 237.7 180 60.6
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 7.2e-61 237.7 179 64.2
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 7.2e-61 237.7 180 64.4
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 1.6e-60 236.5 193 60.6
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 2.1e-60 236.1 180 62.8
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.1e-60 236.1 180 62.8
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.1e-60 236.1 180 62.8
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.1e-60 236.1 180 62.8
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.1e-60 236.1 180 62.8
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.1e-60 236.1 180 62.8
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 2.1e-60 236.1 180 64.4
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 2.1e-60 236.1 180 60.6
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 2.7e-60 235.7 180 62.8
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 6.1e-60 234.6 180 58.9
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 7.9e-60 234.2 180 60.0
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 7.9e-60 234.2 180 61.7
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 7.9e-60 234.2 180 59.4
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.0e-59 233.8 179 60.9
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 1.0e-59 233.8 180 60.0
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 2.3e-59 232.6 180 59.4
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 3.9e-59 231.9 179 62.6
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 3.9e-59 231.9 180 59.4
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 6.7e-59 231.1 180 61.7
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 8.8e-59 230.7 180 61.7
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 8.8e-59 230.7 180 62.2
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 1.5e-58 229.9 180 60.0
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.8e-57 225.7 175 61.7
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 7.7e-55 217.6 225 50.2
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 7.7e-55 217.6 180 60.0
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 5.0e-54 214.9 180 58.9
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.2e-52 210.3 143 68.5
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.2e-52 210.3 143 68.5
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 6.1e-52 208.0 154 61.7
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 2.3e-51 206.1 179 57.0
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.7e-49 199.9 142 64.8
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 2.4e-48 196.1 180 55.0
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 1.7e-46 189.9 182 55.5
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.9e-46 189.1 138 64.5
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 2.8e-41 172.6 120 68.3
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 9.1e-40 167.5 153 46.4
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 4.5e-39 165.2 124 64.5
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 2.2e-38 162.9 177 46.9
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 6.8e-35 151.4 155 44.5
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 4.5e-31 138.7 178 41.0
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 3.6e-28 129.0 85 68.2
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.6e-26 122.9 101 59.4
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 9.2e-24 114.4 85 60.0
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 1.5e-21 107.1 80 68.8
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 6.8e-19 98.2 72 61.1
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 6.8e-19 98.2 72 61.1
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 2.0e-18 96.7 72 59.7
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.4e-16 90.5 67 64.2
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 1.4e-11 73.9 156 29.5
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.3e-09 67.4 69 47.8
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 4.9e-09 65.5 60 53.3
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 3.2e-08 62.8 177 30.5
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.6e-07 60.5 66 48.5
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 6.0e-07 58.5 49 51.0
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 1.3e-06 57.4 56 53.6


User provided reference genes

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