Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.1e-203 712.2 378 100.0
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 5.6e-124 448.4 273 85.7
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 3.6e-123 445.7 386 63.5
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 5.8e-121 438.3 427 57.6
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 6.4e-120 434.9 380 62.9
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 8.4e-120 434.5 401 59.4
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 1.1e-119 434.1 431 57.3
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.1e-119 434.1 411 58.2
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.9e-119 433.3 380 61.8
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.9e-119 433.3 409 57.7
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.9e-119 433.3 409 57.7
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.4e-119 433.0 434 56.9
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.4e-119 433.0 434 56.9
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.1e-119 431.4 411 57.9
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.2e-118 430.6 417 58.0
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.6e-118 430.3 390 61.5
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.6e-118 430.3 390 61.5
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 2.7e-118 429.5 421 58.0
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.5e-118 429.1 395 61.3
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 4.6e-118 428.7 416 57.0
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 6.0e-118 428.3 407 57.7
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 6.0e-118 428.3 417 57.1
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 1.0e-117 427.6 417 57.6
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 1.3e-117 427.2 417 57.3
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 2.3e-117 426.4 411 57.7
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 2.3e-117 426.4 431 56.6
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 3.0e-117 426.0 421 56.8
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 3.0e-117 426.0 419 56.8
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 3.9e-117 425.6 409 57.9
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 5.1e-117 425.2 411 56.7
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 5.1e-117 425.2 415 56.6
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 5.1e-117 425.2 412 57.5
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 6.7e-117 424.9 429 56.4
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 8.7e-117 424.5 418 56.5
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 8.7e-117 424.5 509 50.7
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 8.7e-117 424.5 379 61.7
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 8.7e-117 424.5 432 56.0
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.1e-116 424.1 435 55.9
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.1e-116 424.1 414 57.0
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 1.5e-116 423.7 414 57.0
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 1.9e-116 423.3 412 57.0
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.9e-116 423.3 413 56.7
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 2.5e-116 422.9 411 58.6
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 2.5e-116 422.9 396 58.6
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 2.5e-116 422.9 414 57.2
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 4.3e-116 422.2 415 56.1
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 5.6e-116 421.8 422 57.3
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 5.6e-116 421.8 409 58.7
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 5.6e-116 421.8 430 54.0
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 7.4e-116 421.4 409 56.5
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.4e-116 421.4 409 57.5
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 7.4e-116 421.4 425 56.7
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 9.6e-116 421.0 411 58.4
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 1.3e-115 420.6 423 56.0
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.6e-115 420.2 418 56.0
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 1.6e-115 420.2 436 55.3
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 1.6e-115 420.2 426 56.1
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 2.1e-115 419.9 391 59.3
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.1e-115 419.9 416 57.0
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 2.1e-115 419.9 419 57.3
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 2.1e-115 419.9 410 57.3
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 2.8e-115 419.5 420 56.2
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 4.8e-115 418.7 420 56.7
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 6.2e-115 418.3 419 56.6
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 8.1e-115 417.9 455 53.6
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.1e-114 417.5 423 56.3
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.4e-114 417.2 416 56.5
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.4e-114 417.2 413 56.7
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.4e-114 417.2 424 56.8
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.4e-114 416.4 418 56.5
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.4e-114 416.4 409 57.0
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.4e-114 416.4 409 57.0
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 2.4e-114 416.4 423 56.0
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 5.3e-114 415.2 411 57.4
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 9.0e-114 414.5 418 55.5
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 9.0e-114 414.5 364 60.2
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 9.0e-114 414.5 411 57.2
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 1.2e-113 414.1 421 56.5
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 1.5e-113 413.7 426 54.9
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 2.0e-113 413.3 412 56.6
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 3.4e-113 412.5 417 54.7
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 5.8e-113 411.8 425 54.8
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 9.9e-113 411.0 409 56.2
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 1.7e-112 410.2 411 55.5
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 1.7e-112 410.2 411 55.5
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 2.2e-112 409.8 407 56.8
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.9e-112 409.5 367 56.9
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 3.8e-112 409.1 433 55.2
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.4e-112 408.3 423 55.6
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 8.4e-112 407.9 417 54.7
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.4e-111 407.1 406 56.7
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 2.4e-111 406.4 406 55.9
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 2.4e-111 406.4 413 55.4
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 3.2e-111 406.0 440 53.6
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 4.2e-111 405.6 407 56.5
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 4.2e-111 405.6 387 56.6
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 1.2e-110 404.1 365 56.2
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 6.0e-110 401.7 492 49.6
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.0e-109 401.0 453 51.7
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 3.0e-109 399.4 431 54.3
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.9e-109 399.1 367 56.1
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 5.3e-106 388.7 380 55.0
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.2e-105 387.5 355 60.3
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.5e-105 387.1 367 54.8
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.1e-103 380.9 415 52.5
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 4.2e-103 379.0 430 50.5
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 1.3e-101 374.0 335 62.7
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.1e-100 370.9 443 50.3
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 9.6e-100 367.9 233 77.3
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 3.7e-99 365.9 264 71.6
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 4.8e-99 365.5 550 43.6
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.1e-98 362.8 333 56.2
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 1.0e-96 357.8 376 53.5
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 1.9e-95 353.6 420 52.4
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 2.7e-94 349.7 408 51.7
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.7e-94 349.7 389 53.0
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.2e-91 340.1 333 53.8
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 3.4e-89 332.8 333 52.9
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 5.0e-88 328.9 256 64.5
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 4.2e-87 325.9 320 56.9
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 1.0e-85 321.2 396 50.0
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 4.4e-84 315.8 393 49.6
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.8e-83 313.2 390 49.2
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.1e-82 309.7 424 47.2
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.1e-76 291.2 363 48.2
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 2.8e-75 286.6 377 48.5
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.2e-75 285.0 353 47.3
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 3.2e-71 273.1 372 47.0
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.3e-68 263.1 337 47.8
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 4.4e-68 262.7 247 57.9
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 1.5e-63 247.7 345 46.1
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 9.8e-60 235.0 271 50.9
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 4.2e-55 219.5 226 54.4
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 6.1e-54 215.7 213 56.3
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 5.2e-53 212.6 385 38.7
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 3.4e-52 209.9 222 55.0
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 4.4e-52 209.5 139 74.8
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 1.6e-49 201.1 252 46.8
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 4.3e-39 166.4 181 48.1
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.2e-38 164.9 121 66.9
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.6e-38 164.5 286 37.8
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 8.0e-38 162.2 95 83.2
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 9.8e-36 155.2 127 64.6
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 3.2e-34 150.2 88 83.0
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 2.1e-30 137.5 76 86.8
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 6.6e-24 115.9 106 52.8
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.4e-21 108.2 82 72.0
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 2.0e-20 104.4 76 68.4
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 4.1e-18 96.7 90 56.7
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.7e-17 94.0 76 65.8
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 1.1e-15 88.6 51 76.5
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.7e-14 83.2 51 74.5
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.4e-13 80.9 51 72.5
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.1e-13 80.5 55 69.1
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.0e-13 80.1 53 71.7
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 2.6e-12 77.4 51 72.5
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 7.6e-12 75.9 51 74.5
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.7e-11 74.7 51 68.6
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 3.8e-11 73.6 87 48.3
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.8e-11 73.6 48 75.0
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.1e-10 72.0 39 82.1
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 1.7e-08 64.7 40 77.5
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 3.0e-08 63.9 70 54.3
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 8.7e-08 62.4 94 42.6
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 8.7e-08 62.4 52 59.6
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 5.6e-07 59.7 36 77.8


User provided reference genes

Program Settings