Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0760 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 1.4e-307 1058.9 581 100.0
SMO356G0609 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 8.0e-279 963.4 582 91.1
Potri.001G390600 Populus trichocarpa HOM05D006614 ORTHO05D008217 2.0e-48 198.0 272 41.2
Cpa.g.sc77.8 Carica papaya HOM05D006614 ORTHO05D008217 5.9e-48 196.4 277 40.1
Cc05_g11080 Coffea canephora HOM05D006614 ORTHO05D008217 7.7e-48 196.1 274 39.4
Glyma.14G066300 Glycine max HOM05D006614 ORTHO05D008217 1.0e-47 195.7 272 37.5
Medtr5g080700 Medicago truncatula HOM05D006614 ORTHO05D008217 1.0e-47 195.7 267 38.2
arahy.Tifrunner.gnm1.ann1.087IU6 Arachis hypogaea HOM05D006614 ORTHO05D008217 1.3e-47 195.3 246 40.7
HanXRQChr15g0476201 Helianthus annuus HOM05D006614 ORTHO05D008217 2.2e-47 194.5 250 41.6
VMungo0647G0674 Vigna mungo HOM05D006614 ORTHO05D008217 2.2e-47 194.5 271 37.6
Sabra16G0256000 Salix brachista HOM05D006614 ORTHO05D008217 2.9e-47 194.1 271 39.5
GSVIVG01014198001 Vitis vinifera HOM05D006614 ORTHO05D008217 2.9e-47 194.1 275 39.3
arahy.Tifrunner.gnm1.ann1.UH0U35 Arachis hypogaea HOM05D006614 ORTHO05D008217 3.8e-47 193.7 246 40.2
Cfa019566 Carpinus fangiana HOM05D006614 ORTHO05D008217 3.8e-47 193.7 250 41.2
Psat2g179000 Pisum sativum HOM05D006614 ORTHO05D008217 5.0e-47 193.4 266 38.0
Ca_05900_v3 Cicer arietinum L. HOM05D006614 ORTHO05D008217 8.5e-47 192.6 267 38.2
Lalb_Chr17g0346371 Lupinus albus HOM05D006614 ORTHO05D008217 8.5e-47 192.6 272 37.1
Solyc07g062440.1 Solanum lycopersicum HOM05D006614 ORTHO05D008217 1.5e-46 191.8 247 41.3
Pp3c16_3160 Physcomitrium patens HOM05D006614 ORTHO05D008217 1.9e-46 191.4 270 39.6
Haze_09323 Corylus avellana HOM05D006614 ORTHO05D008217 2.5e-46 191.0 274 39.8
Nitab4.5_0006953g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 3.2e-46 190.7 282 38.3
Sopen07g030680 Solanum pennellii HOM05D006614 ORTHO05D008217 3.2e-46 190.7 247 41.3
SGA_v2.0_scaffold34G13782 Striga asiatica HOM05D006614 ORTHO05D008217 3.2e-46 190.7 255 41.2
Atru.chr2.2145 Acer truncatum HOM05D006614 ORTHO05D008217 7.2e-46 189.5 251 40.6
MBI12_g10753_MAGBIO Magnolia biondii HOM05D006614 ORTHO05D008217 7.2e-46 189.5 275 37.8
PGSC0003DMG400046940 Solanum tuberosum HOM05D006614 ORTHO05D008217 7.2e-46 189.5 247 41.3
unitig_747.g21586 Utricularia gibba HOM05D006614 ORTHO05D008217 7.2e-46 189.5 500 30.8
TPR.G25839 Trifolium pratense HOM05D006614 ORTHO05D008217 9.4e-46 189.1 267 37.8
PGR142G0467 Punica granatum HOM05D006614 ORTHO05D008217 1.2e-45 188.7 248 41.1
Rhsim06G0208100 Rhododendron simsii HOM05D006614 ORTHO05D008217 1.2e-45 188.7 247 40.5
Phvul.008G231100 Phaseolus vulgaris HOM05D006614 ORTHO05D008217 1.6e-45 188.3 272 36.8
ECA240G1555 Erigeron canadensis HOM05D006614 ORTHO05D008217 2.1e-45 188.0 249 40.6
Nitab4.5_0003565g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 2.1e-45 188.0 247 40.1
TAR375G0652 Trochodendron aralioides HOM05D006614 ORTHO05D008217 2.1e-45 188.0 274 37.6
vmacro23466 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 2.1e-45 188.0 247 40.1
CiPaw.11G160300 Carya illinoinensis HOM05D006614 ORTHO05D008217 2.7e-45 187.6 251 41.0
LjContig00141g0022614 Lotus japonicus HOM05D006614 ORTHO05D008217 2.7e-45 187.6 276 35.9
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 3.6e-45 187.2 251 39.4
Peaxi162Scf00111g01423 Petunia axillaris HOM05D006614 ORTHO05D008217 4.7e-45 186.8 247 39.3
Manes.15G094800 Manihot esculenta HOM05D006614 ORTHO05D008217 6.1e-45 186.4 249 40.2
Actinidia12578 Actinidia chinensis HOM05D006614 ORTHO05D008217 8.0e-45 186.0 277 38.6
AagrBONN_evm.TU.Sc2ySwM_228.5094 Anthoceros agrestis HOM05D006614 ORTHO05D008217 8.0e-45 186.0 325 35.7
Oeu061358.1 Olea europaea HOM05D006614 ORTHO05D008217 8.0e-45 186.0 247 38.9
Migut.M00728 Erythranthe guttata HOM05D006614 ORTHO05D008217 1.0e-44 185.7 259 39.4
SalBow5G0223 Salvia bowleyana HOM05D006614 ORTHO05D008217 1.0e-44 185.7 492 29.5
TWI38G0322 Tripterygium wilfordii HOM05D006614 ORTHO05D008217 1.0e-44 185.7 270 38.1
CANSAT35G1108 Cannabis sativa HOM05D006614 ORTHO05D008217 1.4e-44 185.3 252 39.3
Ah.09g230960 Amaranthus hybridus HOM05D006614 ORTHO05D008217 2.3e-44 184.5 250 38.8
ClCG11G017450 Citrullus lanatus HOM05D006614 ORTHO05D008217 4.0e-44 183.7 250 38.4
MELO3C025640.2 Cucumis melo HOM05D006614 ORTHO05D008217 4.0e-44 183.7 279 37.3
Sc16g0007600 Simmondsia chinensis HOM05D006614 ORTHO05D008217 4.0e-44 183.7 269 39.4
ATR0810G004 Amborella trichopoda HOM05D006614 ORTHO05D008217 6.8e-44 183.0 482 36.7
CAN.G375.15 Capsicum annuum HOM05D006614 ORTHO05D008217 6.8e-44 183.0 281 37.0
CsaV3_4G033120 Cucumis sativus L. HOM05D006614 ORTHO05D008217 6.8e-44 183.0 279 37.6
DCAR_021025 Daucus carota HOM05D006614 ORTHO05D008217 1.2e-43 182.2 272 38.2
Hma1.2p1_0290F.1_g114840 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 1.5e-43 181.8 284 35.9
CDE12G0873 Ceratophyllum demersum HOM05D006614 ORTHO05D008217 2.0e-43 181.4 257 39.7
PSO063G1163 Papaver somniferum HOM05D006614 ORTHO05D008217 2.0e-43 181.4 276 35.1
A05p34510 Brassica napus HOM05D006614 ORTHO05D008217 3.4e-43 180.6 270 37.8
BraA05t22271Z Brassica rapa HOM05D006614 ORTHO05D008217 3.4e-43 180.6 270 37.8
MSTRG.6677 Avicennia marina HOM05D006614 ORTHO05D008217 4.4e-43 180.3 480 34.0
SEGI_22211 Sequoiadendron giganteum HOM05D006614 ORTHO05D008217 4.4e-43 180.3 277 36.5
Lj1P829T27 Lonicera japonica HOM05D006614 ORTHO05D008217 7.5e-43 179.5 248 38.7
QL12p002313 Quercus lobata HOM05D006614 ORTHO05D008217 7.5e-43 179.5 260 41.2
Prupe.4G164700 Prunus persica HOM05D006614 ORTHO05D008217 9.8e-43 179.1 258 37.2
CSS0027020 Camellia sinensis var. sinensis HOM05D006614 ORTHO05D008217 1.3e-42 178.7 248 38.3
EL10Ac8g18445 Beta vulgaris HOM05D006614 ORTHO05D008217 1.7e-42 178.3 250 38.0
BcaB06g25331 Brassica carinata HOM05D006614 ORTHO05D008217 2.2e-42 177.9 270 37.0
PSO421G0295 Papaver somniferum HOM05D006614 ORTHO05D008217 2.2e-42 177.9 276 34.4
AUR62021467 Chenopodium quinoa HOM05D006614 ORTHO05D008217 2.8e-42 177.6 250 38.8
Aa31LG8G2110 Aethionema arabicum HOM05D006614 ORTHO05D008217 3.7e-42 177.2 270 37.0
Sed0001562 Sechium edule HOM05D006614 ORTHO05D008217 3.7e-42 177.2 280 36.8
Thhalv10022322m.g Eutrema salsugineum HOM05D006614 ORTHO05D008217 4.8e-42 176.8 248 38.3
Hma1.2p1_0290F.1_g114830 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 4.8e-42 176.8 502 30.9
AT3G14900 Arabidopsis thaliana HOM05D006614 ORTHO05D008217 8.3e-42 176.0 270 37.8
BcaB06g29517 Brassica carinata HOM05D006614 ORTHO05D008217 8.3e-42 176.0 270 37.0
C05p52250 Brassica napus HOM05D006614 ORTHO05D008217 8.3e-42 176.0 270 37.0
BolC5t33914H Brassica oleracea HOM05D006614 ORTHO05D008217 8.3e-42 176.0 270 37.0
AUR62010952 Chenopodium quinoa HOM05D006614 ORTHO05D008217 8.3e-42 176.0 278 35.6
COL.COLO4_17543 Corchorus olitorius HOM05D006614 ORTHO05D008217 1.1e-41 175.6 267 37.8
FvH4_3g18290 Fragaria vesca HOM05D006614 ORTHO05D008217 1.4e-41 175.3 257 36.6
FAN16G2994 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.4e-41 175.3 257 36.6
Thecc.07G117000 Theobroma cacao HOM05D006614 ORTHO05D008217 1.4e-41 175.3 277 36.8
CARHR089840 Cardamine hirsuta HOM05D006614 ORTHO05D008217 1.8e-41 174.9 285 35.1
Sp3g13110 Schrenkiella parvula HOM05D006614 ORTHO05D008217 1.8e-41 174.9 248 37.9
Thecc.07G116400 Theobroma cacao HOM05D006614 ORTHO05D008217 1.8e-41 174.9 277 36.8
RcHm_v2.0_Chr5g0030921 Rosa chinensis HOM05D006614 ORTHO05D008217 2.4e-41 174.5 383 31.9
Zm00001eb078480 Zea mays HOM05D006614 ORTHO05D008217 2.4e-41 174.5 271 37.3
AL3G27220 Arabidopsis lyrata HOM05D006614 ORTHO05D008217 3.1e-41 174.1 269 36.4
Carub.0003s1456 Capsella rubella HOM05D006614 ORTHO05D008217 3.1e-41 174.1 248 37.9
Gorai.001G269000 Gossypium raimondii HOM05D006614 ORTHO05D008217 3.1e-41 174.1 248 37.9
FAN11G1715 Fragaria x ananassa HOM05D006614 ORTHO05D008217 5.4e-41 173.3 257 36.2
HPP92_015867 Vanilla planifolia HOM05D006614 ORTHO05D008217 7.0e-41 172.9 255 38.0
Aqoxy1G00012 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 1.6e-40 171.8 275 36.0
Gohir.D07G233600 Gossypium hirsutum HOM05D006614 ORTHO05D008217 2.7e-40 171.0 251 37.8
THA.LOC104822565 Tarenaya hassleriana HOM05D006614 ORTHO05D008217 4.5e-40 170.2 270 35.9
Duzib213G0629 Durio zibethinus HOM05D006614 ORTHO05D008217 5.9e-40 169.9 277 36.1
MD03G1243600 Malus domestica HOM05D006614 ORTHO05D008217 1.0e-39 169.1 491 36.0
Psat0s3066g0080 Pisum sativum HOM05D006614 ORTHO05D008217 2.5e-38 164.5 266 34.2
Gohir.A07G226400 Gossypium hirsutum HOM05D006614 ORTHO05D008217 7.2e-38 162.9 482 31.5
vmacro11940 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 7.2e-38 162.9 274 36.1
Os04g0497900 Oryza sativa ssp. japonica HOM05D006614 ORTHO05D008217 1.2e-37 162.2 253 35.2
Eucgr.K01881 Eucalyptus grandis HOM05D006614 ORTHO05D008217 5.7e-35 153.3 168 46.4
Mapoly0097s0086 Marchantia polymorpha HOM05D006614 ORTHO05D008217 1.7e-34 151.8 286 31.8
Aqoxy3G00116 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 7.0e-33 146.4 241 35.3
FAN25G0567 Fragaria x ananassa HOM05D006614 ORTHO05D008217 3.7e-26 124.0 254 28.7
Ciclev10023881m.g Citrus clementina HOM05D006614 ORTHO05D008217 4.0e-20 104.0 157 35.7
Glyma.02G250300 Glycine max HOM05D006614 ORTHO05D008217 1.5e-19 102.1 156 35.9
CBR_g47994 Chara braunii HOM05D006614 ORTHO05D008217 6.4e-18 96.7 229 24.9
HPP92_015860 Vanilla planifolia HOM05D006614 ORTHO05D008217 1.7e-07 62.0 48 50.0
MD11G1263800 Malus domestica HOM05D006614 ORTHO05D008217 6.6e-07 60.1 82 39.0


User provided reference genes

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