Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 5.2e-108 394.4 203 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 7.9e-40 167.9 148 61.5
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.4e-38 161.4 181 56.9
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.4e-38 161.4 155 56.1
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.1e-36 157.5 119 68.1
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.3e-34 150.6 132 63.6
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.8e-34 149.1 137 58.4
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 8.4e-34 147.9 132 59.8
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.2e-32 144.1 134 61.2
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 2.7e-32 142.9 155 51.0
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 6.0e-32 141.7 121 63.6
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 7.9e-32 141.4 123 61.8
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.0e-31 141.0 131 58.0
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.0e-31 141.0 131 58.0
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.3e-31 140.6 121 61.2
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.3e-31 140.6 131 57.3
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 1.8e-31 140.2 131 55.7
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 2.3e-31 139.8 127 59.1
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 2.3e-31 139.8 121 62.0
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.3e-31 139.8 123 62.6
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 3.0e-31 139.4 131 55.7
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.9e-31 139.0 132 60.6
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 5.1e-31 138.7 104 67.3
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 5.1e-31 138.7 154 51.9
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 5.1e-31 138.7 121 61.2
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 5.1e-31 138.7 103 68.9
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 6.7e-31 138.3 121 61.2
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 6.7e-31 138.3 186 47.8
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 6.7e-31 138.3 131 57.3
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 8.7e-31 137.9 131 55.7
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 8.7e-31 137.9 120 60.8
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 8.7e-31 137.9 121 61.2
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 1.1e-30 137.5 104 68.3
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.1e-30 137.5 123 62.6
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.1e-30 137.5 123 62.6
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 1.1e-30 137.5 161 51.6
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.1e-30 137.5 131 55.7
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.5e-30 137.1 104 68.3
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 1.5e-30 137.1 186 47.3
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.5e-30 137.1 125 59.2
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 1.9e-30 136.7 121 59.5
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 1.9e-30 136.7 121 60.3
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 1.9e-30 136.7 186 46.8
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 2.5e-30 136.3 131 58.0
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.5e-30 136.3 131 58.0
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 2.5e-30 136.3 121 60.3
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 2.5e-30 136.3 121 61.2
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 3.3e-30 136.0 123 62.6
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.3e-30 136.0 133 57.9
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 3.3e-30 136.0 121 61.2
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.3e-30 136.0 120 60.8
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 3.3e-30 136.0 121 59.5
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 4.3e-30 135.6 131 55.0
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 5.7e-30 135.2 103 68.9
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 5.7e-30 135.2 103 68.9
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 5.7e-30 135.2 103 68.9
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 5.7e-30 135.2 103 68.9
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 5.7e-30 135.2 103 68.0
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 5.7e-30 135.2 122 60.7
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 5.7e-30 135.2 103 68.9
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 7.4e-30 134.8 103 68.0
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 7.4e-30 134.8 121 60.3
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 7.4e-30 134.8 121 59.5
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 7.4e-30 134.8 121 59.5
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 7.4e-30 134.8 131 57.3
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 9.6e-30 134.4 103 68.0
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 9.6e-30 134.4 186 46.8
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 1.3e-29 134.0 103 68.9
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.6e-29 133.7 103 68.9
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.6e-29 133.7 103 68.0
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 1.6e-29 133.7 123 59.3
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.6e-29 133.7 129 59.7
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 2.1e-29 133.3 103 68.0
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 2.1e-29 133.3 103 68.0
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 2.1e-29 133.3 103 68.0
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 2.1e-29 133.3 103 68.0
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.1e-29 133.3 120 60.0
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 2.8e-29 132.9 100 70.0
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 2.8e-29 132.9 132 56.1
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.8e-29 132.9 122 62.3
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 3.7e-29 132.5 165 46.1
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 3.7e-29 132.5 103 63.1
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 3.7e-29 132.5 102 67.6
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 4.8e-29 132.1 162 48.1
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 4.8e-29 132.1 131 55.0
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 4.8e-29 132.1 122 59.0
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 4.8e-29 132.1 120 60.0
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 4.8e-29 132.1 121 58.7
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 6.3e-29 131.7 120 59.2
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 6.3e-29 131.7 123 60.2
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 6.3e-29 131.7 162 48.8
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.3e-29 131.7 192 44.3
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 6.3e-29 131.7 175 48.0
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 6.3e-29 131.7 190 45.8
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 6.3e-29 131.7 122 58.2
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 8.2e-29 131.3 124 60.5
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.2e-29 131.3 124 60.5
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.2e-29 131.3 105 66.7
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 8.2e-29 131.3 128 57.0
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 8.2e-29 131.3 124 57.3
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 8.2e-29 131.3 118 56.8
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 1.1e-28 131.0 121 57.9
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.1e-28 131.0 102 67.6
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 1.1e-28 131.0 102 67.6
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.1e-28 131.0 103 65.0
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.1e-28 131.0 123 59.3
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.4e-28 129.8 109 64.2
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 2.4e-28 129.8 123 60.2
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.4e-28 129.8 102 66.7
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.4e-28 129.8 103 67.0
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.4e-28 129.8 103 67.0
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 2.4e-28 129.8 197 43.7
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 3.1e-28 129.4 121 57.9
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 3.1e-28 129.4 131 51.9
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 3.1e-28 129.4 103 66.0
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 4.1e-28 129.0 174 47.1
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 4.1e-28 129.0 121 58.7
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 4.1e-28 129.0 120 58.3
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 4.1e-28 129.0 103 64.1
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 5.3e-28 128.6 131 52.7
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 5.3e-28 128.6 120 59.2
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 5.3e-28 128.6 120 56.7
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 6.9e-28 128.3 102 63.7
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 6.9e-28 128.3 121 58.7
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 6.9e-28 128.3 121 58.7
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 6.9e-28 128.3 135 54.1
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 6.9e-28 128.3 122 59.8
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 9.0e-28 127.9 121 58.7
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 9.0e-28 127.9 126 55.6
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 1.2e-27 127.5 124 56.5
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 1.2e-27 127.5 120 58.3
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.5e-27 127.1 122 58.2
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.5e-27 127.1 123 56.1
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.5e-27 127.1 121 58.7
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 2.6e-27 126.3 102 64.7
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 3.4e-27 125.9 102 64.7
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 3.4e-27 125.9 103 63.1
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 3.4e-27 125.9 103 63.1
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 7.6e-27 124.8 101 63.4
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.0e-26 124.4 145 48.3
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 1.1e-25 120.9 117 54.7
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 4.1e-20 102.4 95 57.9
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 6.9e-20 101.7 88 62.5
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 1.3e-18 97.4 65 73.8
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 7.9e-16 88.2 90 51.1
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 6.7e-15 85.1 90 50.0
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 6.7e-15 85.1 118 39.8
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.1e-14 84.3 120 43.3
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.1e-14 84.3 120 43.3
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 7.4e-14 81.6 118 39.0
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.3e-13 78.6 60 56.7
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 5.3e-12 75.5 105 38.1
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.2e-11 74.3 74 47.3
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.3e-10 70.9 65 56.9
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 3.8e-10 69.3 56 64.3
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 3.8e-10 69.3 56 64.3


User provided reference genes

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