Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 4.0e-120 434.9 238 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 1.4e-67 260.4 238 61.8
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 2.8e-60 236.1 237 56.1
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 1.2e-58 230.7 237 56.1
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 1.2e-55 220.7 228 56.1
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 7.3e-53 211.5 235 53.2
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 3.6e-52 209.1 235 52.8
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 6.2e-52 208.4 240 50.8
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 4.0e-51 205.7 235 51.5
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 8.9e-51 204.5 235 51.9
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 1.2e-50 204.1 235 51.9
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 1.2e-50 204.1 235 51.1
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 2.6e-50 203.0 235 52.3
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 3.4e-50 202.6 235 51.9
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 3.4e-50 202.6 233 51.9
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 4.4e-50 202.2 235 51.5
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 7.5e-50 201.4 235 52.3
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 7.5e-50 201.4 235 52.3
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 7.5e-50 201.4 235 52.3
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.3e-49 200.7 235 50.2
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 2.2e-49 199.9 227 52.9
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 2.9e-49 199.5 235 49.8
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 2.9e-49 199.5 235 51.9
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 2.9e-49 199.5 235 51.5
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.7e-49 199.1 235 51.5
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 3.7e-49 199.1 235 50.6
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 3.7e-49 199.1 233 50.2
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 4.9e-49 198.7 226 52.2
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 4.9e-49 198.7 235 51.9
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 4.9e-49 198.7 235 51.9
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 8.3e-49 198.0 237 51.1
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 1.1e-48 197.6 235 51.1
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 1.1e-48 197.6 232 50.9
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 1.4e-48 197.2 235 50.2
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 1.4e-48 197.2 235 51.9
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 1.4e-48 197.2 237 51.5
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 1.4e-48 197.2 237 51.1
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 1.4e-48 197.2 234 50.9
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 1.9e-48 196.8 234 50.0
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 2.4e-48 196.4 235 49.8
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 2.4e-48 196.4 225 50.7
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.4e-48 196.4 235 49.8
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 3.2e-48 196.1 235 50.6
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 3.2e-48 196.1 235 50.2
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 3.2e-48 196.1 235 51.5
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 4.1e-48 195.7 235 51.1
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 4.1e-48 195.7 238 50.4
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 5.4e-48 195.3 235 51.1
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 5.4e-48 195.3 235 51.1
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 7.0e-48 194.9 235 52.3
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 7.0e-48 194.9 235 49.8
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 7.0e-48 194.9 238 50.0
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 7.0e-48 194.9 235 50.2
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 7.0e-48 194.9 233 50.6
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 9.2e-48 194.5 235 51.5
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 9.2e-48 194.5 235 50.2
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 9.2e-48 194.5 235 50.2
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 9.2e-48 194.5 235 50.2
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 9.2e-48 194.5 233 49.8
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 1.2e-47 194.1 226 50.9
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 1.2e-47 194.1 237 47.7
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 1.2e-47 194.1 233 49.8
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 1.2e-47 194.1 235 51.5
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 1.6e-47 193.7 235 50.6
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.6e-47 193.7 246 50.0
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 2.7e-47 193.0 234 47.9
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 3.5e-47 192.6 235 49.4
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 4.6e-47 192.2 235 49.8
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 6.0e-47 191.8 235 49.8
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 6.0e-47 191.8 235 49.4
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 6.0e-47 191.8 235 48.9
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 7.8e-47 191.4 235 48.1
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 7.8e-47 191.4 250 49.2
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 7.8e-47 191.4 238 47.1
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 1.0e-46 191.0 248 48.0
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 1.0e-46 191.0 233 48.1
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 1.3e-46 190.7 235 48.5
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.7e-46 190.3 235 48.5
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 1.7e-46 190.3 236 49.6
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 1.7e-46 190.3 227 49.3
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 2.3e-46 189.9 233 49.4
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 2.3e-46 189.9 235 48.5
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 2.3e-46 189.9 236 49.2
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 3.0e-46 189.5 235 51.1
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 3.0e-46 189.5 235 46.8
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 3.9e-46 189.1 235 48.1
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 5.1e-46 188.7 235 49.4
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 6.6e-46 188.3 248 47.6
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 1.5e-45 187.2 235 47.7
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 2.5e-45 186.4 227 50.2
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 3.3e-45 186.0 229 48.5
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 4.3e-45 185.7 228 48.7
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 4.3e-45 185.7 235 48.1
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 5.6e-45 185.3 233 48.1
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 7.3e-45 184.9 219 51.6
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 9.5e-45 184.5 233 47.2
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 1.2e-44 184.1 235 48.1
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.6e-44 183.7 235 47.7
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.6e-44 183.7 235 47.7
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 2.1e-44 183.3 226 47.3
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 2.8e-44 183.0 235 46.4
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 2.8e-44 183.0 228 47.4
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 2.8e-44 183.0 228 47.4
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 3.6e-44 182.6 228 48.2
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 4.7e-44 182.2 214 49.5
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 4.7e-44 182.2 233 45.1
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 6.2e-44 181.8 228 48.2
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 1.4e-43 180.6 235 44.7
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 1.4e-43 180.6 226 46.5
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 1.8e-43 180.3 228 46.9
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 1.8e-43 180.3 235 47.2
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 1.2e-42 177.6 275 42.2
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 1.5e-42 177.2 228 46.5
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 4.4e-42 175.6 228 46.5
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 5.8e-42 175.3 228 46.5
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 5.8e-42 175.3 228 46.5
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 5.8e-42 175.3 228 46.5
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 5.8e-42 175.3 228 46.5
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 5.8e-42 175.3 220 46.4
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 7.5e-42 174.9 218 47.7
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 9.9e-42 174.5 223 47.5
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 9.9e-42 174.5 264 43.2
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 2.2e-41 173.3 210 48.6
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 3.7e-41 172.6 233 45.1
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 4.9e-41 172.2 219 47.5
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 4.1e-40 169.1 217 47.9
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 7.1e-40 168.3 215 47.4
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 2.3e-38 163.3 230 44.8
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 1.9e-37 160.2 234 44.0
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.5e-37 159.8 202 48.5
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 5.8e-34 148.7 203 43.8
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 8.4e-33 144.8 191 48.2
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 7.1e-32 141.7 228 41.2
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 1.3e-30 137.5 174 48.3
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.7e-30 137.1 178 47.8
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 5.1e-30 135.6 170 47.1
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 6.6e-30 135.2 179 47.5
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 6.2e-28 128.6 177 44.6
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 3.1e-27 126.3 244 38.1
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 6.9e-27 125.2 146 52.1
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 4.2e-24 115.9 227 34.4
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 7.3e-21 105.1 122 52.5
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 1.4e-19 100.9 114 49.1
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 2.6e-18 96.7 180 40.0
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 7.9e-15 85.1 164 34.8
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 3.9e-14 82.8 120 40.8
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 9.6e-13 78.2 81 50.6
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 2.8e-12 76.6 229 32.8
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 7.6e-10 68.6 134 38.8
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 4.9e-09 65.9 63 52.4
Pp3c11_16200 Physcomitrium patens HOM05D000764 ORTHO05D002819 3.5e-07 59.7 233 23.6
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 6.0e-07 58.9 94 44.7
CAN.G982.7 Capsicum annuum HOM05D000764 ORTHO05D002819 7.9e-07 58.5 221 24.9
EL10Ac5g11218 Beta vulgaris HOM05D000764 ORTHO05D002819 3.0e-06 56.6 229 24.5
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 3.9e-06 56.2 232 24.6
Solyc03g114470.2 Solanum lycopersicum HOM05D000764 ORTHO05D002819 3.9e-06 56.2 190 24.7
AUR62036921 Chenopodium quinoa HOM05D000764 ORTHO05D002819 8.7e-06 55.1 232 24.6


User provided reference genes

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