Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.4e-107 392.9 193 100.0
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 5.3e-62 241.5 183 59.6
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 9.1e-62 240.7 184 60.3
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.2e-61 240.4 183 59.6
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 5.9e-61 238.0 192 56.2
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.5e-59 233.4 192 57.3
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 5.5e-59 231.5 184 58.7
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.6e-58 229.9 188 56.4
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 3.6e-58 228.8 185 57.8
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 6.1e-58 228.0 184 58.7
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.3e-57 226.1 184 56.5
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 3.9e-57 225.3 185 56.8
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 3.9e-57 225.3 182 57.7
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 6.7e-57 224.6 183 59.0
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.5e-56 223.4 185 55.1
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.5e-56 223.4 184 55.4
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 2.0e-56 223.0 184 57.6
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 2.0e-56 223.0 184 54.9
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 2.0e-56 223.0 184 55.4
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 4.4e-56 221.9 182 54.4
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 2.8e-55 219.2 182 54.4
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 2.8e-55 219.2 182 56.0
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 4.8e-55 218.4 185 55.1
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 6.3e-55 218.0 184 54.9
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 2.4e-54 216.1 184 56.0
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.1e-54 215.7 185 56.2
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 9.1e-54 214.2 183 55.7
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 9.1e-54 214.2 182 54.4
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.2e-53 213.8 184 56.5
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.2e-53 213.8 185 55.1
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.6e-53 213.4 185 53.0
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.0e-53 213.0 182 56.0
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.0e-52 210.7 187 53.5
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.3e-52 210.3 185 56.8
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.7e-52 209.9 184 54.9
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.7e-52 209.9 185 56.8
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 2.2e-52 209.5 184 54.3
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.8e-52 208.8 185 56.8
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 6.5e-52 208.0 185 56.2
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 8.5e-52 207.6 183 54.6
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 8.5e-52 207.6 183 54.6
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 8.5e-52 207.6 183 54.6
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 8.5e-52 207.6 187 53.5
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.5e-51 206.8 185 53.5
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.5e-51 206.8 186 53.8
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 1.9e-51 206.5 184 53.8
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.5e-51 206.1 187 54.0
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.2e-51 205.7 184 56.0
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 4.2e-51 205.3 191 52.4
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 5.5e-51 204.9 184 54.9
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 5.5e-51 204.9 186 52.2
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 7.2e-51 204.5 186 53.2
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 9.4e-51 204.1 186 51.6
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 9.4e-51 204.1 185 51.9
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 2.1e-50 203.0 186 53.2
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 2.1e-50 203.0 184 54.3
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 3.6e-50 202.2 186 52.7
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 3.6e-50 202.2 186 52.7
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 6.1e-50 201.4 183 52.5
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 6.1e-50 201.4 183 52.5
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 8.0e-50 201.1 184 52.7
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 8.0e-50 201.1 183 56.3
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.0e-49 200.7 186 51.1
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 1.0e-49 200.7 184 53.3
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.0e-49 200.7 185 53.5
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.4e-49 200.3 186 55.4
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.4e-49 200.3 185 52.4
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 2.3e-49 199.5 183 53.6
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 2.3e-49 199.5 187 51.9
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 2.3e-49 199.5 183 52.5
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 4.0e-49 198.7 184 51.1
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 4.0e-49 198.7 183 54.1
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 4.0e-49 198.7 184 53.8
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 4.0e-49 198.7 183 51.4
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 5.2e-49 198.4 187 50.3
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 5.2e-49 198.4 185 53.5
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 6.8e-49 198.0 187 50.8
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 6.8e-49 198.0 185 50.8
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 8.8e-49 197.6 183 53.6
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 1.2e-48 197.2 183 55.7
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.2e-48 197.2 184 53.3
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 1.5e-48 196.8 187 50.3
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.5e-48 196.8 185 49.7
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.5e-48 196.8 184 52.7
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.0e-48 196.4 186 54.3
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.0e-48 196.4 186 54.3
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 2.0e-48 196.4 187 51.3
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 2.0e-48 196.4 182 50.5
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 2.6e-48 196.1 185 49.7
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.6e-48 196.1 149 61.1
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 4.4e-48 195.3 183 54.6
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 4.4e-48 195.3 186 54.8
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 9.7e-48 194.1 183 54.6
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 9.7e-48 194.1 168 54.8
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.3e-47 193.7 185 49.7
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 1.3e-47 193.7 185 49.7
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.3e-47 193.7 180 55.6
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.8e-47 192.6 186 53.2
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 2.8e-47 192.6 183 50.3
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 3.7e-47 192.2 183 54.1
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 6.3e-47 191.4 183 50.3
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.1e-46 190.7 179 50.8
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 1.4e-46 190.3 180 55.0
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 1.4e-46 190.3 180 55.0
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.8e-46 189.9 180 55.0
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 3.1e-46 189.1 185 48.6
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 5.3e-46 188.3 186 47.8
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 7.0e-46 188.0 183 50.3
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 9.1e-46 187.6 183 49.7
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.9e-43 179.9 184 48.9
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 2.5e-43 179.5 206 44.2
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 9.4e-43 177.6 188 43.6
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 4.7e-42 175.3 201 45.8
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 4.0e-41 172.2 150 54.7
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 6.8e-41 171.4 175 49.7
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 8.8e-41 171.0 165 53.9
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 8.8e-41 171.0 165 51.5
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.4e-40 168.7 148 56.8
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 4.4e-40 168.7 186 47.3
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 1.7e-39 166.8 147 53.1
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 2.8e-39 166.0 166 48.8
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 5.0e-36 155.2 184 45.1
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 8.6e-36 154.5 189 43.4
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 2.3e-33 146.4 199 43.7
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 5.7e-32 141.7 184 44.6
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 9.8e-32 141.0 148 51.4
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.7e-31 139.0 104 62.5
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.2e-29 134.0 165 46.7
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 1.5e-27 127.1 104 61.5
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.5e-27 127.1 113 56.6
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 3.6e-26 122.5 118 51.7
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.5e-24 117.1 192 35.4
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 8.3e-23 111.3 191 37.2
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 7.3e-19 98.2 162 36.4
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.3e-17 93.2 98 51.0
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.1e-14 84.3 178 28.1
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 2.3e-12 76.6 64 56.2
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 5.1e-12 75.5 66 60.6
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 6.6e-12 75.1 158 31.0
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.2e-10 70.9 80 43.8
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 4.0e-09 65.9 73 46.6
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 2.0e-08 63.5 79 45.6


User provided reference genes

Program Settings