Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 1.2e-222 776.2 390 100.0
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 3.5e-36 156.8 253 37.2
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 1.3e-35 154.8 252 38.9
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 1.9e-34 151.0 262 38.5
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 5.6e-34 149.4 262 38.5
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 1.6e-33 147.9 266 35.7
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 6.2e-33 146.0 262 34.7
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 3.1e-32 143.7 264 37.1
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 6.8e-32 142.5 266 34.2
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 2.0e-31 141.0 258 34.9
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 4.4e-31 139.8 257 33.5
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 4.4e-31 139.8 261 33.7
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 9.8e-31 138.7 257 36.6
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.3e-30 138.3 261 34.1
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 2.9e-30 137.1 264 36.0
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 2.9e-30 137.1 253 33.2
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 2.9e-30 137.1 179 41.9
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 3.7e-30 136.7 266 33.5
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 3.7e-30 136.7 256 35.9
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 3.7e-30 136.7 163 44.2
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 4.9e-30 136.3 259 35.5
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 4.9e-30 136.3 256 35.9
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 6.4e-30 136.0 253 33.6
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 8.3e-30 135.6 260 33.8
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 1.1e-29 135.2 262 35.9
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.1e-29 135.2 262 32.4
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.4e-29 134.8 261 33.0
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 1.9e-29 134.4 259 33.6
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 2.4e-29 134.0 259 34.4
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 2.4e-29 134.0 266 33.1
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 3.2e-29 133.7 253 36.4
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 3.2e-29 133.7 264 34.1
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 4.1e-29 133.3 260 34.6
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 4.1e-29 133.3 262 33.6
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 5.4e-29 132.9 259 34.4
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 5.4e-29 132.9 255 33.3
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 5.4e-29 132.9 255 33.3
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 5.4e-29 132.9 259 31.7
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 7.0e-29 132.5 255 34.9
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 7.0e-29 132.5 258 33.7
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.2e-29 132.1 258 34.1
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 9.2e-29 132.1 255 32.9
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.2e-28 131.7 259 33.6
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 1.2e-28 131.7 255 34.5
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.6e-28 131.3 259 33.2
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.6e-28 131.3 252 33.3
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 2.0e-28 131.0 257 35.4
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 2.0e-28 131.0 254 34.3
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 2.7e-28 130.6 266 35.3
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 4.6e-28 129.8 266 33.1
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 4.6e-28 129.8 255 35.7
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 7.8e-28 129.0 258 32.9
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.0e-27 128.6 253 32.8
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 1.0e-27 128.6 261 33.7
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 1.3e-27 128.3 259 32.8
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.7e-27 127.9 263 31.9
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 3.0e-27 127.1 260 32.7
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 3.0e-27 127.1 261 33.3
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 3.9e-27 126.7 257 32.7
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 3.9e-27 126.7 163 42.3
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 5.0e-27 126.3 255 32.2
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 6.6e-27 125.9 253 33.2
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 6.6e-27 125.9 255 32.2
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 6.6e-27 125.9 261 33.0
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 8.6e-27 125.6 258 33.3
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 8.6e-27 125.6 249 31.7
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 8.6e-27 125.6 258 31.8
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 8.6e-27 125.6 171 43.9
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 1.1e-26 125.2 257 33.1
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 1.1e-26 125.2 259 34.7
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 1.5e-26 124.8 262 32.8
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.9e-26 124.4 177 39.0
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 2.5e-26 124.0 265 33.2
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 3.3e-26 123.6 258 32.6
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 7.3e-26 122.5 260 31.9
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 7.3e-26 122.5 255 31.8
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 7.3e-26 122.5 163 42.3
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 9.5e-26 122.1 260 32.3
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 1.2e-25 121.7 269 31.6
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 1.6e-25 121.3 145 44.1
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.8e-25 120.6 256 32.4
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 4.7e-25 119.8 252 33.3
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 8.1e-25 119.0 260 35.4
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 1.4e-24 118.2 262 30.9
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 2.3e-24 117.5 262 29.8
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 4.0e-24 116.7 171 37.4
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 6.8e-24 115.9 201 34.8
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 1.5e-23 114.8 252 31.7
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.0e-23 114.4 266 32.0
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 2.6e-23 114.0 264 33.7
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 4.4e-23 113.2 261 32.2
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 7.5e-23 112.5 193 38.9
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 7.5e-23 112.5 265 30.2
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 9.8e-23 112.1 262 32.8
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 2.2e-22 110.9 161 41.0
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 2.9e-22 110.5 166 39.2
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 4.9e-22 109.8 261 30.7
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 4.9e-22 109.8 142 39.4
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 2.4e-21 107.5 172 39.0
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 3.2e-21 107.1 266 30.8
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 2.1e-20 104.4 262 31.7
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 6.0e-20 102.8 271 29.5
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 7.8e-20 102.4 166 38.0
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 1.1e-18 98.6 196 35.7
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.9e-18 97.8 329 28.6
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 6.2e-17 92.8 212 30.2
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 2.3e-16 90.9 203 32.0
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 6.8e-16 89.4 210 32.4
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 8.9e-16 89.0 127 37.0
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 2.0e-15 87.8 211 28.0
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 2.1e-12 77.8 75 48.0
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 6.0e-12 76.3 75 52.0
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 5.2e-08 63.2 161 28.0
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 6.9e-08 62.8 161 27.3
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-07 62.0 117 31.6
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 7.6e-07 59.3 161 28.6
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 2.9e-06 57.4 59 47.5


User provided reference genes

Program Settings