Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.3e-168 595.5 301 100.0
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.0e-84 316.6 309 51.8
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 5.9e-84 315.1 308 51.9
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.8e-83 312.4 309 51.1
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.2e-79 300.8 286 51.4
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.0e-76 290.0 310 49.7
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 6.6e-75 285.0 309 49.8
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.5e-74 283.1 317 49.2
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.1e-73 278.5 307 49.2
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 3.5e-68 262.7 306 47.7
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 5.9e-68 261.9 303 46.5
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.8e-68 261.5 310 45.8
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.0e-67 261.2 310 45.5
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.3e-67 260.0 310 45.5
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 6.6e-67 258.5 306 44.1
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.5e-66 256.5 304 45.1
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 5.6e-66 255.4 309 45.0
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 7.3e-66 255.0 304 44.7
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 1.6e-65 253.8 304 44.7
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.1e-65 253.4 306 44.1
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 2.1e-65 253.4 306 45.1
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 2.8e-65 253.1 306 44.4
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.8e-65 253.1 306 44.1
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 6.1e-65 251.9 305 42.3
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 6.1e-65 251.9 303 45.2
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.0e-64 251.1 303 45.9
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 4.0e-64 249.2 302 44.4
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 8.9e-64 248.1 306 44.1
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.5e-63 247.3 310 44.5
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.5e-63 247.3 306 45.8
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.6e-63 246.5 303 44.6
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.6e-63 246.5 304 44.7
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 4.4e-63 245.7 304 44.4
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 7.5e-63 245.0 305 43.6
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 7.5e-63 245.0 305 43.6
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 7.5e-63 245.0 303 43.2
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 7.5e-63 245.0 303 43.9
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.3e-62 244.2 309 44.7
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.2e-62 243.4 303 44.2
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 2.9e-62 243.0 304 43.8
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 3.7e-62 242.7 315 41.0
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.1e-61 241.1 304 42.1
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.9e-61 240.4 305 43.9
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 7.0e-61 238.4 309 43.0
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 9.2e-61 238.0 309 44.3
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 9.2e-61 238.0 313 42.5
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.2e-60 237.7 305 42.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.6e-60 237.3 304 42.1
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.7e-60 236.5 304 42.4
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 4.6e-60 235.7 303 41.9
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.6e-60 235.7 306 41.5
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.8e-60 235.0 305 42.0
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.3e-59 233.4 304 42.1
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 2.3e-59 233.4 303 41.9
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 5.0e-59 232.3 308 42.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 5.0e-59 232.3 305 44.3
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 8.6e-59 231.5 303 40.9
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 8.6e-59 231.5 306 45.1
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.1e-58 231.1 306 41.5
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.5e-58 230.7 306 41.5
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.5e-58 230.7 304 41.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.5e-58 230.7 305 41.6
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.5e-58 230.7 304 41.4
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.9e-58 230.3 306 41.2
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.5e-58 229.9 303 42.9
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 3.3e-58 229.6 304 42.1
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 5.6e-58 228.8 304 41.4
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 5.6e-58 228.8 314 40.1
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.6e-58 228.8 303 41.6
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 7.3e-58 228.4 307 44.0
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 7.3e-58 228.4 308 41.2
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.3e-58 228.4 303 41.6
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 9.5e-58 228.0 314 40.1
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.6e-57 227.3 304 40.8
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.6e-57 227.3 307 44.3
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.6e-57 227.3 310 40.0
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.1e-57 226.9 306 40.2
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.8e-57 226.5 309 42.7
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.8e-57 226.5 305 40.7
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.6e-57 226.1 308 42.2
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 3.6e-57 226.1 307 44.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 4.7e-57 225.7 305 39.7
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.4e-56 224.2 304 40.8
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.8e-56 223.8 305 41.0
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 2.3e-56 223.4 304 40.8
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 2.3e-56 223.4 303 40.9
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 6.8e-56 221.9 303 40.9
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 8.9e-56 221.5 302 42.1
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.2e-55 221.1 308 41.9
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.2e-55 221.1 306 41.8
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 2.0e-55 220.3 316 42.4
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 4.4e-55 219.2 309 40.8
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 5.8e-55 218.8 304 37.8
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 7.5e-55 218.4 307 40.1
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 9.8e-55 218.0 316 39.2
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 9.8e-55 218.0 305 40.7
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.3e-54 217.6 302 40.1
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.2e-54 216.9 308 41.6
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.9e-54 216.5 302 39.1
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 3.7e-54 216.1 306 38.9
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 3.7e-54 216.1 306 38.9
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 3.7e-54 216.1 306 43.8
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 3.7e-54 216.1 309 40.8
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 4.9e-54 215.7 305 41.0
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 6.4e-54 215.3 302 41.7
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 8.3e-54 214.9 316 38.9
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.1e-53 214.5 306 41.2
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.1e-53 214.5 310 40.6
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.4e-53 214.2 308 39.6
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.4e-53 214.2 307 40.4
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.4e-53 214.2 310 40.6
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.9e-53 213.8 306 39.5
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.9e-53 213.8 310 40.6
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 2.4e-53 213.4 304 40.8
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.2e-53 213.0 304 41.4
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 3.2e-53 213.0 303 41.6
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 5.4e-53 212.2 303 41.6
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 5.4e-53 212.2 307 40.7
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 9.2e-53 211.5 318 38.4
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.2e-52 211.1 305 39.0
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.1e-52 210.3 307 39.1
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 2.7e-52 209.9 370 36.8
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 7.8e-52 208.4 300 40.0
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 7.8e-52 208.4 307 41.7
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.0e-51 208.0 332 37.7
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 3.9e-51 206.1 306 37.3
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 3.9e-51 206.1 306 37.3
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.9e-51 206.1 298 39.6
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 5.1e-51 205.7 305 37.7
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 6.6e-51 205.3 339 37.2
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 1.5e-50 204.1 307 38.4
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 2.5e-50 203.4 314 37.6
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.3e-50 203.0 271 42.4
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 6.2e-49 198.7 314 36.9
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 4.0e-48 196.1 306 38.2
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 8.9e-48 194.9 285 41.1
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.5e-47 194.1 297 37.4
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 9.9e-47 191.4 303 37.3
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 2.9e-46 189.9 301 38.9
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 4.9e-46 189.1 432 29.9
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 6.4e-46 188.7 306 36.3
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.9e-45 187.2 333 34.5
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 5.4e-45 185.7 243 46.1
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.1e-44 183.7 366 32.0
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.0e-44 182.2 279 39.4
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 5.6e-42 175.6 217 40.1
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 7.3e-42 175.3 216 44.0
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 9.5e-42 174.9 265 37.7
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 9.5e-42 174.9 275 41.5
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.2e-36 157.9 241 40.7
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.7e-35 154.1 202 42.1
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 2.8e-33 146.7 217 35.5
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.7e-33 146.0 300 34.0
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.0e-31 140.6 130 52.3
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 2.6e-31 140.2 218 35.3
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 3.4e-31 139.8 234 38.0
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.7e-30 137.5 202 41.1
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.9e-30 136.7 215 38.6
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.4e-29 134.4 215 38.1
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 4.6e-28 129.4 233 35.6
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.1e-26 124.8 199 40.2
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 1.6e-25 120.9 192 34.9
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 6.9e-24 115.5 286 29.7
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.2e-23 114.8 133 45.1
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 2.7e-20 103.6 212 34.9
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.3e-17 94.7 195 34.9
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.6e-17 94.4 228 31.6
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 3.8e-14 83.2 303 25.4
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 3.2e-13 80.1 87 48.3
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 7.4e-10 68.9 103 38.8
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 8.2e-09 65.5 61 49.2
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.1e-08 65.1 64 45.3
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.4e-08 63.9 144 34.7
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 6.5e-06 55.8 74 39.2


User provided reference genes

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