Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO217G0014 Selaginella moellendorffii HOM05D005546 ORTHO05D006458 2.5e-25 117.9 55 100.0
SMO356G0390 Selaginella moellendorffii HOM05D005546 ORTHO05D006458 2.5e-25 117.9 55 100.0
Cpa.g.sc52.156 Carica papaya HOM05D005546 ORTHO05D006458 3.9e-18 94.0 55 76.4
Actinidia11165 Actinidia chinensis HOM05D005546 ORTHO05D006458 5.1e-18 93.6 55 76.4
CSS0007349 Camellia sinensis var. sinensis HOM05D005546 ORTHO05D006458 6.7e-18 93.2 55 76.4
ECA234G3368 Erigeron canadensis HOM05D000557 ORTHO05D002315 6.7e-18 93.2 55 78.2
HanXRQChr17g0558411 Helianthus annuus HOM05D005546 ORTHO05D006458 8.7e-18 92.8 55 78.2
ClCG07G002640 Citrullus lanatus HOM05D005546 ORTHO05D006458 1.1e-17 92.4 54 77.8
Rhsim06G0129400 Rhododendron simsii HOM05D005546 ORTHO05D006458 1.1e-17 92.4 55 74.5
vmacro12387 Vaccinium macrocarpon HOM05D005546 ORTHO05D006458 1.1e-17 92.4 55 74.5
FvH4_6g27700 Fragaria vesca HOM05D005546 ORTHO05D006458 1.5e-17 92.0 55 76.4
FAN02G2038 Fragaria x ananassa HOM05D003255 ORTHO05D006458 1.5e-17 92.0 55 76.4
FAN14G3666 Fragaria x ananassa HOM05D005546 ORTHO05D006458 1.5e-17 92.0 55 76.4
FAN23G3057 Fragaria x ananassa HOM05D005546 ORTHO05D006458 1.5e-17 92.0 55 76.4
TWI23G0943 Tripterygium wilfordii HOM05D005546 ORTHO05D006458 1.5e-17 92.0 55 76.4
Ciclev10017707m.g Citrus clementina HOM05D005546 ORTHO05D006458 1.9e-17 91.7 55 74.5
Pp3c20_22300 Physcomitrium patens HOM05D005546 ORTHO05D006458 1.9e-17 91.7 55 76.4
Prupe.3G113500 Prunus persica HOM05D005546 ORTHO05D006458 1.9e-17 91.7 55 74.5
Sed0025906 Sechium edule HOM05D005546 ORTHO05D006458 1.9e-17 91.7 55 76.4
Eucgr.K01146 Eucalyptus grandis HOM05D005546 ORTHO05D006458 2.5e-17 91.3 54 75.9
MELO3C004040.2 Cucumis melo HOM05D005546 ORTHO05D006458 3.3e-17 90.9 55 74.5
CsaV3_2G008280 Cucumis sativus L. HOM05D005546 ORTHO05D006458 3.3e-17 90.9 55 74.5
DCAR_021297 Daucus carota HOM05D005546 ORTHO05D006458 3.3e-17 90.9 55 76.4
Migut.M00246 Erythranthe guttata HOM05D005546 ORTHO05D006458 3.3e-17 90.9 55 74.5
Ca_03841_v3 Cicer arietinum L. HOM05D005546 ORTHO05D006458 4.3e-17 90.5 55 74.5
Cc05_g08540 Coffea canephora HOM05D005546 ORTHO05D006458 4.3e-17 90.5 55 74.5
MD17G1264200 Malus domestica HOM05D005546 ORTHO05D006458 4.3e-17 90.5 54 75.9
Medtr2g083920 Medicago truncatula HOM05D005546 ORTHO05D006458 4.3e-17 90.5 55 74.5
Nitab4.5_0000249g0130 Nicotiana tabacum HOM05D005546 ORTHO05D006458 4.3e-17 90.5 55 74.5
MSTRG.6780 Avicennia marina HOM05D005546 ORTHO05D006458 5.7e-17 90.1 55 74.5
CAN.G1360.15 Capsicum annuum HOM05D005546 ORTHO05D006458 5.7e-17 90.1 55 74.5
Oeu030086.3 Olea europaea HOM05D005546 ORTHO05D006458 5.7e-17 90.1 55 74.5
SGA_v2.0_scaffold9G04842 Striga asiatica HOM05D005546 ORTHO05D006458 5.7e-17 90.1 55 76.4
Atru.chr6.2762 Acer truncatum HOM05D005546 ORTHO05D006458 7.4e-17 89.7 55 74.5
A05p03330 Brassica napus HOM05D005546 ORTHO05D006458 7.4e-17 89.7 55 70.9
C04p03900 Brassica napus HOM05D005546 ORTHO05D006458 7.4e-17 89.7 55 70.9
BolC4t22026H Brassica oleracea HOM05D005546 ORTHO05D006458 7.4e-17 89.7 55 70.9
BraA05t19321Z Brassica rapa HOM05D005546 ORTHO05D006458 7.4e-17 89.7 55 70.9
FAN05G1474 Fragaria x ananassa HOM05D005546 ORTHO05D006458 7.4e-17 89.7 55 74.5
Lsat_1_v5_gn_4_65101 Lactuca sativa HOM05D005546 ORTHO05D006458 7.4e-17 89.7 55 72.7
PSO170G1916 Papaver somniferum HOM05D005546 ORTHO05D006458 7.4e-17 89.7 55 74.5
RcHm_v2.0_Chr2g0130851 Rosa chinensis HOM05D005546 ORTHO05D006458 7.4e-17 89.7 55 72.7
Thecc.01G154000 Theobroma cacao HOM05D005546 ORTHO05D006458 7.4e-17 89.7 55 74.5
HPP92_022988 Vanilla planifolia HOM05D005546 ORTHO05D006458 7.4e-17 89.7 55 74.5
Haze_13429 Corylus avellana HOM05D005546 ORTHO05D006458 9.6e-17 89.4 55 74.5
Duzib147G1413 Durio zibethinus HOM05D005546 ORTHO05D006458 9.6e-17 89.4 55 72.7
Duzib264G0641 Durio zibethinus HOM05D005546 ORTHO05D006458 9.6e-17 89.4 55 72.7
Gohir.A12G091600 Gossypium hirsutum HOM05D005546 ORTHO05D006458 9.6e-17 89.4 55 72.7
Lj8A100G106 Lonicera japonica HOM05D005546 ORTHO05D006458 9.6e-17 89.4 55 74.5
PGR142G3849 Punica granatum HOM05D005546 ORTHO05D006458 9.6e-17 89.4 55 74.5
SalBow7G1389 Salvia bowleyana HOM05D005546 ORTHO05D006458 9.6e-17 89.4 55 72.7
Aqoxy4G00255 Aquilegia oxysepala HOM05D005546 ORTHO05D006458 1.3e-16 89.0 55 72.7
Thhalv10016894m.g Eutrema salsugineum HOM05D005546 ORTHO05D006458 1.3e-16 89.0 55 69.1
Lalb_Chr03g0030041 Lupinus albus HOM05D005546 ORTHO05D006458 1.3e-16 89.0 55 74.5
Lalb_Chr19g0134821 Lupinus albus HOM05D005546 ORTHO05D006458 1.3e-16 89.0 55 74.5
TAR629G1410 Trochodendron aralioides HOM05D005546 ORTHO05D006458 1.3e-16 89.0 55 74.5
CiPaw.03G192900 Carya illinoinensis HOM05D005546 ORTHO05D006458 1.6e-16 88.6 55 74.5
CDE09G0167 Ceratophyllum demersum HOM05D005546 ORTHO05D006458 1.6e-16 88.6 55 74.5
COL.COLO4_33615 Corchorus olitorius HOM05D005546 ORTHO05D006458 1.6e-16 88.6 55 72.7
ATR0012G013 Amborella trichopoda HOM05D005546 ORTHO05D006458 2.1e-16 88.2 55 74.5
Carub.0004s2518 Capsella rubella HOM05D005546 ORTHO05D006458 2.1e-16 88.2 55 67.3
CDE02G0455 Ceratophyllum demersum HOM05D005546 ORTHO05D006458 2.1e-16 88.2 55 72.7
AUR62024047 Chenopodium quinoa HOM05D005546 ORTHO05D006458 2.1e-16 88.2 55 70.9
Nitab4.5_0007923g0010 Nicotiana tabacum HOM05D005546 ORTHO05D006458 2.1e-16 88.2 55 72.7
QL08p042319 Quercus lobata HOM05D005546 ORTHO05D006458 2.1e-16 88.2 55 72.7
Solyc07g055260.3 Solanum lycopersicum HOM05D005546 ORTHO05D006458 2.1e-16 88.2 55 72.7
Sopen07g026960 Solanum pennellii HOM05D005546 ORTHO05D006458 2.1e-16 88.2 55 72.7
PGSC0003DMG400020433 Solanum tuberosum HOM05D005546 ORTHO05D006458 2.1e-16 88.2 55 72.7
CARHR137830 Cardamine hirsuta HOM05D005546 ORTHO05D006458 2.8e-16 87.8 55 67.3
AUR62040436 Chenopodium quinoa HOM05D005546 ORTHO05D006458 2.8e-16 87.8 55 70.9
Dinv12364 Davidia involucrata HOM05D005546 ORTHO05D006458 2.8e-16 87.8 55 72.7
arahy.Tifrunner.gnm1.ann1.6YZ37K Arachis hypogaea HOM05D005546 ORTHO05D006458 3.7e-16 87.4 55 72.7
CANSAT64G0501 Cannabis sativa HOM05D005546 ORTHO05D006458 3.7e-16 87.4 54 72.2
Glyma.13G289600 Glycine max HOM05D005546 ORTHO05D006458 3.7e-16 87.4 55 70.9
Phvul.011G127500 Phaseolus vulgaris HOM05D005546 ORTHO05D006458 3.7e-16 87.4 55 72.7
VMungo1127G0112 Vigna mungo HOM05D005546 ORTHO05D006458 3.7e-16 87.4 55 72.7
Glyma.06G275400 Glycine max HOM05D005546 ORTHO05D006458 4.8e-16 87.0 55 72.7
Gohir.D12G091700 Gossypium hirsutum HOM05D005546 ORTHO05D006458 4.8e-16 87.0 55 70.9
Gorai.008G099300 Gossypium raimondii HOM05D005546 ORTHO05D006458 4.8e-16 87.0 55 70.9
Aa31LG1G24500 Aethionema arabicum HOM05D005546 ORTHO05D006458 6.2e-16 86.7 55 70.9
arahy.Tifrunner.gnm1.ann1.UW10HH Arachis hypogaea HOM05D005546 ORTHO05D006458 6.2e-16 86.7 55 72.7
Peaxi162Scf00469g00623 Petunia axillaris HOM05D005546 ORTHO05D006458 6.2e-16 86.7 55 69.1
arahy.Tifrunner.gnm1.ann1.UYWS6C Arachis hypogaea HOM05D005546 ORTHO05D006458 8.2e-16 86.3 55 70.9
arahy.Tifrunner.gnm1.ann1.ZDU917 Arachis hypogaea HOM05D005546 ORTHO05D006458 8.2e-16 86.3 55 70.9
MSTRG.12830 Avicennia marina HOM05D005546 ORTHO05D006458 8.2e-16 86.3 55 72.7
Manes.02G088600 Manihot esculenta HOM05D005546 ORTHO05D006458 8.2e-16 86.3 55 70.9
Medtr4g080350 Medicago truncatula HOM05D005546 ORTHO05D006458 8.2e-16 86.3 55 70.9
Pp3c24_1420 Physcomitrium patens HOM05D005546 ORTHO05D006458 8.2e-16 86.3 55 70.9
THA.LOC104824189 Tarenaya hassleriana HOM05D005546 ORTHO05D006458 8.2e-16 86.3 55 69.1
AL4G41330 Arabidopsis lyrata HOM05D005546 ORTHO05D006458 1.1e-15 85.9 55 65.5
AT2G42750 Arabidopsis thaliana HOM05D005546 ORTHO05D006458 1.1e-15 85.9 55 65.5
Glyma.12G130000 Glycine max HOM05D005546 ORTHO05D006458 1.1e-15 85.9 55 70.9
Potri.014G143400 Populus trichocarpa HOM05D005546 ORTHO05D006458 1.1e-15 85.9 55 69.1
Sp4g24870 Schrenkiella parvula HOM05D005546 ORTHO05D006458 1.1e-15 85.9 55 65.5
TPR.G20000 Trifolium pratense HOM05D005546 ORTHO05D006458 1.1e-15 85.9 55 70.9
Nn3g21116 Nelumbo nucifera HOM05D005546 ORTHO05D006458 1.4e-15 85.5 55 70.9
Hund00861 Selenicereus undatus HOM05D005546 ORTHO05D006458 1.4e-15 85.5 55 72.7
TPR.G40234 Trifolium pratense HOM05D005546 ORTHO05D006458 1.4e-15 85.5 55 70.9
Ah.01g015890 Amaranthus hybridus HOM05D001556 ORTHO05D001505 1.8e-15 85.1 55 69.1
Psat7g164440 Pisum sativum HOM05D005546 ORTHO05D006458 1.8e-15 85.1 55 70.9
Mapoly0005s0147 Marchantia polymorpha HOM05D005546 ORTHO05D006458 2.4e-15 84.7 54 66.7
Sabra14G0108400 Salix brachista HOM05D005546 ORTHO05D006458 2.4e-15 84.7 55 67.3
VMungo1080G0059 Vigna mungo HOM05D005546 ORTHO05D006458 2.4e-15 84.7 55 69.1
Zm00001eb361960 Zea mays HOM05D005546 ORTHO05D006458 2.4e-15 84.7 55 69.1
Phvul.005G094000 Phaseolus vulgaris HOM05D005546 ORTHO05D006458 3.1e-15 84.3 55 67.3
LjContig00201_ERROPOS200000g0008486 Lotus japonicus HOM05D005546 ORTHO05D006458 4.0e-15 84.0 55 74.5
MBI06_g36540_MAGBIO Magnolia biondii HOM05D005546 ORTHO05D006458 4.0e-15 84.0 62 67.7
Nn1g04507 Nelumbo nucifera HOM05D005546 ORTHO05D006458 4.0e-15 84.0 55 69.1
SEGI_27856 Sequoiadendron giganteum HOM05D005546 ORTHO05D006458 4.0e-15 84.0 55 70.9
Ca_01720_v3 Cicer arietinum L. HOM05D005546 ORTHO05D006458 5.3e-15 83.6 55 72.7
Glyma.12G212100 Glycine max HOM05D005546 ORTHO05D006458 5.3e-15 83.6 55 67.3
Os05g0529700 Oryza sativa ssp. japonica HOM05D005546 ORTHO05D006458 5.3e-15 83.6 55 67.3
Os01g0730500 Oryza sativa ssp. japonica HOM05D005546 ORTHO05D006458 6.9e-15 83.2 55 67.3
GSVIVG01020748001 Vitis vinifera HOM05D005546 ORTHO05D006458 6.9e-15 83.2 55 67.3
Zm00001eb293310 Zea mays HOM05D005546 ORTHO05D006458 6.9e-15 83.2 55 67.3
EL10Ac9g20985 Beta vulgaris HOM05D005546 ORTHO05D006458 9.0e-15 82.8 54 68.5
unitig_62.g23133 Utricularia gibba HOM05D005546 ORTHO05D006458 1.2e-14 82.4 55 67.3
A05p03260 Brassica napus HOM05D005546 ORTHO05D006458 1.0e-13 79.3 51 68.6
BraA05t19315Z Brassica rapa HOM05D005546 ORTHO05D006458 1.0e-13 79.3 51 68.6
BraA09t41561Z Brassica rapa HOM05D005546 ORTHO05D006458 1.0e-13 79.3 51 68.6
Hund07771 Selenicereus undatus HOM05D005546 ORTHO05D006458 2.2e-13 78.2 55 69.1
Sc21g0004080 Simmondsia chinensis HOM05D005546 ORTHO05D006458 2.9e-13 77.8 55 61.8
CBR_g12210 Chara braunii HOM05D005546 ORTHO05D006458 1.9e-12 75.1 53 62.3
CDE02G1833 Ceratophyllum demersum HOM05D005546 ORTHO05D006458 3.2e-12 74.3 49 67.3
C04p45180 Brassica napus HOM05D005546 ORTHO05D006458 1.6e-11 72.0 55 61.8
BolC4t26098H Brassica oleracea HOM05D005546 ORTHO05D006458 1.6e-11 72.0 55 61.8
Cre01.g009900 Chlamydomonas reinhardtii HOM05D005546 ORTHO05D006458 4.6e-11 70.5 55 58.2
BcaC02g09653 Brassica carinata HOM05D005546 ORTHO05D006458 1.0e-10 69.3 53 64.2
AagrBONN_evm.TU.Sc2ySwM_117.1640 Anthoceros agrestis HOM05D005546 ORTHO05D006458 3.0e-10 67.8 44 72.7
EL10As20g24204 Beta vulgaris HOM05D005546 ORTHO05D006458 5.1e-10 67.0 44 65.9
Lsat_1_v5_gn_4_31781 Lactuca sativa HOM05D006845 ORTHO05D014206 6.7e-10 66.6 44 70.5
Lsat_1_v5_gn_5_134240 Lactuca sativa HOM05D006845 ORTHO05D014206 6.7e-10 66.6 44 70.5
Lsat_1_v5_gn_7_62660 Lactuca sativa HOM05D006845 ORTHO05D014206 6.7e-10 66.6 44 70.5
Lsat_1_v5_gn_7_87221 Lactuca sativa HOM05D003066 ORTHO05D004162 6.7e-10 66.6 44 70.5
Cre02.g104500 Chlamydomonas reinhardtii HOM05D005546 ORTHO05D006458 2.5e-09 64.7 54 50.0


User provided reference genes

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