Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 0.0e+00 1645.2 814 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 1.6e-160 570.9 854 41.0
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 2.0e-150 537.3 858 37.5
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.8e-143 514.2 885 37.7
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 1.4e-140 504.6 849 35.2
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 5.1e-130 469.5 849 35.8
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 7.3e-129 465.7 837 34.8
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 1.6e-128 464.5 841 35.3
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 6.2e-128 462.6 841 35.3
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 1.4e-127 461.5 834 34.7
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.4e-127 461.5 841 35.7
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 1.8e-127 461.1 848 35.4
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 3.1e-127 460.3 838 35.7
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 3.1e-127 460.3 841 34.1
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 4.0e-127 459.9 847 34.8
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 4.0e-127 459.9 843 35.0
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 6.9e-127 459.1 850 35.6
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 9.0e-127 458.8 841 35.3
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 1.2e-126 458.4 849 34.3
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 1.2e-126 458.4 839 35.5
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 1.5e-126 458.0 855 35.3
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 2.6e-126 457.2 836 35.3
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 4.4e-126 456.4 850 35.5
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 7.6e-126 455.7 850 35.4
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.3e-125 454.9 850 35.1
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 1.7e-125 454.5 839 34.3
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 2.9e-125 453.8 846 34.3
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 3.8e-125 453.4 837 34.9
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 6.4e-125 452.6 839 34.8
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 6.4e-125 452.6 844 35.0
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 6.4e-125 452.6 845 34.9
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 8.4e-125 452.2 837 34.8
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 8.4e-125 452.2 852 35.3
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 8.4e-125 452.2 837 34.2
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.4e-124 451.4 837 34.8
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 1.4e-124 451.4 875 33.1
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 1.4e-124 451.4 835 34.5
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.4e-124 450.7 849 34.0
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 2.4e-124 450.7 849 35.0
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 2.4e-124 450.7 844 35.8
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 5.4e-124 449.5 843 34.3
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 5.4e-124 449.5 836 34.7
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.2e-123 448.4 843 34.3
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 1.6e-123 448.0 837 34.6
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 2.7e-123 447.2 737 36.5
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 2.7e-123 447.2 847 34.1
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 3.5e-123 446.8 845 35.3
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.5e-123 446.8 840 35.0
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 4.6e-123 446.4 838 35.2
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 6.0e-123 446.0 836 34.4
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 6.0e-123 446.0 837 35.4
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 6.0e-123 446.0 845 33.4
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 6.0e-123 446.0 846 34.8
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 2.3e-122 444.1 750 35.9
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 2.3e-122 444.1 847 33.9
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 3.0e-122 443.7 836 35.5
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 5.1e-122 443.0 844 34.4
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 8.7e-122 442.2 847 34.8
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 1.1e-121 441.8 830 35.2
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.5e-121 441.4 845 34.2
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 1.5e-121 441.4 837 34.3
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 2.5e-121 440.7 832 35.6
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 2.5e-121 440.7 831 34.5
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 3.3e-121 440.3 844 34.6
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 5.6e-121 439.5 845 34.2
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 1.3e-120 438.3 845 33.5
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 4.8e-120 436.4 840 34.9
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 6.9e-119 432.6 841 34.1
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 6.9e-119 432.6 840 34.5
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 6.9e-119 432.6 844 34.7
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 9.0e-119 432.2 845 34.1
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 9.0e-119 432.2 838 33.7
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 1.5e-118 431.4 839 34.4
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 3.4e-118 430.3 747 36.8
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 4.5e-118 429.9 851 33.3
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 5.8e-118 429.5 836 34.2
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 7.6e-118 429.1 845 34.0
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 7.6e-118 429.1 841 33.9
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.3e-117 428.3 839 33.6
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 2.2e-117 427.6 839 34.0
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 4.9e-117 426.4 876 34.1
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 4.9e-117 426.4 834 33.9
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 6.4e-117 426.0 845 34.0
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 1.1e-116 425.2 845 33.7
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 1.1e-116 425.2 834 34.1
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.2e-115 421.8 851 34.2
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.0e-114 418.7 844 33.6
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.1e-114 416.4 848 33.8
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 1.1e-113 415.2 850 33.9
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.9e-113 414.5 845 32.7
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 7.4e-113 412.5 836 32.3
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 9.6e-113 412.1 845 32.9
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 9.0e-111 405.6 836 34.3
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 2.9e-109 400.6 901 31.6
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.4e-108 397.5 906 31.7
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 9.3e-108 395.6 827 33.7
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 4.3e-105 386.7 843 33.3
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 2.1e-104 384.4 677 35.3
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 7.6e-102 375.9 737 34.2
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 5.5e-100 369.8 643 35.5
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.8e-98 364.8 594 37.7
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 6.7e-98 362.8 859 32.1
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 9.7e-97 359.0 834 30.3
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 4.1e-95 353.6 731 32.1
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 5.9e-94 349.7 741 31.6
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 8.5e-93 345.9 894 29.4
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 3.2e-92 344.0 779 30.7
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 3.6e-91 340.5 743 31.9
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 7.9e-91 339.3 823 29.4
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 3.6e-83 313.9 738 30.5
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.7e-80 305.1 546 34.6
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 2.0e-73 281.6 566 31.4
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 1.9e-68 265.0 466 34.5
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 2.7e-62 244.6 723 28.8
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 2.2e-61 241.5 580 30.2
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 5.0e-61 240.4 738 29.0
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 8.6e-53 213.0 688 29.1
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.5e-52 212.2 347 36.0
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 4.7e-51 207.2 490 31.2
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.4e-42 179.1 376 32.4
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.3e-40 172.6 402 29.9
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 2.0e-38 165.2 553 26.9
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.9e-28 132.1 163 39.9
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.1e-23 116.3 470 26.0
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 7.1e-23 113.6 187 39.0
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 9.2e-23 113.2 185 35.7
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 2.3e-21 108.6 186 38.2
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 3.3e-20 104.8 186 37.6
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 4.9e-16 90.9 102 41.2
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 8.4e-16 90.1 116 39.7
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 6.0e-14 84.0 84 40.5
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 7.6e-09 67.0 56 57.1
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 6.0e-06 57.4 82 41.5


User provided reference genes

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