Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 3.4e-155 551.6 270 100.0
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 2.4e-108 396.0 259 71.8
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 1.2e-107 393.7 257 73.2
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.9e-105 386.3 259 69.9
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.4e-105 386.0 259 69.5
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 7.1e-105 384.4 259 69.1
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 7.1e-105 384.4 259 69.1
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 9.3e-105 384.0 259 68.7
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 9.3e-105 384.0 259 68.7
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 9.3e-105 384.0 259 68.3
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 1.6e-104 383.3 258 71.3
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.1e-104 382.9 259 68.3
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 3.5e-104 382.1 259 68.3
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 4.6e-104 381.7 258 69.8
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 6.0e-104 381.3 260 68.8
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 7.9e-104 380.9 259 69.9
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 1.0e-103 380.6 259 69.5
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.3e-103 380.2 259 68.7
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 1.8e-103 379.8 259 69.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.3e-103 379.4 259 68.7
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.3e-103 379.4 259 68.7
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 2.3e-103 379.4 259 67.6
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 3.0e-103 379.0 259 69.1
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 3.0e-103 379.0 259 69.1
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 3.0e-103 379.0 259 69.1
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 3.9e-103 378.6 259 68.7
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 3.9e-103 378.6 259 68.7
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 6.7e-103 377.9 259 67.6
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 6.7e-103 377.9 259 68.7
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 6.7e-103 377.9 259 68.3
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 8.7e-103 377.5 259 68.3
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 8.7e-103 377.5 259 68.3
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.5e-102 376.7 259 68.7
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 1.5e-102 376.7 259 69.5
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.5e-102 376.7 260 70.0
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 1.9e-102 376.3 259 68.0
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.9e-102 376.3 259 67.6
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 2.5e-102 375.9 259 67.2
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 4.3e-102 375.2 259 67.2
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 5.6e-102 374.8 259 67.2
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 5.6e-102 374.8 259 68.0
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 5.6e-102 374.8 259 68.0
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 5.6e-102 374.8 259 67.6
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 7.4e-102 374.4 259 68.0
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 9.6e-102 374.0 260 67.7
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 9.6e-102 374.0 259 67.6
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.3e-101 373.6 259 68.0
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.3e-101 373.6 257 70.4
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.3e-101 373.6 259 67.6
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.3e-101 373.6 259 68.3
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 1.6e-101 373.2 259 68.3
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 2.1e-101 372.9 259 68.3
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.8e-101 372.5 255 67.5
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 2.8e-101 372.5 259 67.2
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 3.7e-101 372.1 259 67.2
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 3.7e-101 372.1 259 67.6
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 3.7e-101 372.1 266 66.2
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 4.8e-101 371.7 259 68.0
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 4.8e-101 371.7 260 67.7
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 4.8e-101 371.7 259 68.3
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 4.8e-101 371.7 259 67.6
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 4.8e-101 371.7 259 67.6
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 6.2e-101 371.3 259 68.7
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 6.2e-101 371.3 259 67.6
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.1e-100 370.5 259 67.6
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.1e-100 370.5 259 67.6
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.1e-100 370.5 261 66.7
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 1.8e-100 369.8 259 66.8
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 3.1e-100 369.0 254 68.1
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 3.1e-100 369.0 255 67.8
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 4.0e-100 368.6 259 64.9
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 6.9e-100 367.9 259 66.8
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 1.2e-99 367.1 259 66.4
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 2.0e-99 366.3 259 66.8
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.0e-99 366.3 259 65.3
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.6e-99 365.9 259 66.4
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 4.5e-99 365.2 259 66.0
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 4.5e-99 365.2 254 67.7
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 4.5e-99 365.2 251 68.1
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 2.2e-98 362.8 259 66.4
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 2.9e-98 362.5 259 65.3
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.9e-98 362.5 259 66.8
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 6.5e-98 361.3 259 64.5
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 6.5e-98 361.3 259 64.1
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 8.4e-98 360.9 259 63.7
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 5.5e-97 358.2 243 68.3
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 5.5e-97 358.2 243 68.3
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 9.3e-97 357.5 259 64.5
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 1.2e-96 357.1 260 64.6
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 2.7e-96 355.9 259 64.9
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 3.5e-96 355.5 259 64.5
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 3.5e-96 355.5 243 67.9
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 1.8e-95 353.2 259 63.3
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 2.3e-95 352.8 259 63.3
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 3.0e-95 352.4 259 63.7
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 3.9e-95 352.1 259 64.5
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 5.1e-95 351.7 305 57.0
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 2.1e-93 346.3 243 65.8
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 2.8e-93 345.9 252 63.9
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 7.1e-89 331.3 259 62.9
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 2.1e-88 329.7 260 61.9
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 3.9e-87 325.5 244 62.7
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 6.7e-87 324.7 222 73.0
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.6e-85 320.1 256 63.3
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 8.2e-85 317.8 259 59.5
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 4.2e-81 305.4 218 67.9
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 4.6e-80 302.0 228 66.7
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 1.8e-79 300.1 191 72.8
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.3e-77 293.9 250 61.2
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 3.7e-77 292.4 189 70.4
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.5e-75 287.0 189 69.8
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 2.0e-75 286.6 191 69.1
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 2.6e-75 286.2 262 53.1
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 5.9e-75 285.0 191 68.6
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 6.1e-72 275.0 194 69.1
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 4.4e-70 268.9 185 71.9
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 7.2e-65 251.5 174 69.5
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.3e-55 219.9 255 45.5
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 1.5e-54 217.2 206 55.8
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 3.5e-51 206.1 190 56.8
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 3.6e-48 196.1 258 43.8
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 7.0e-44 181.8 135 65.2
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 7.8e-35 151.8 282 34.0
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 3.0e-26 123.2 118 54.2
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 2.5e-25 120.2 82 62.2
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 4.7e-24 115.9 333 27.6
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 8.9e-23 111.7 65 78.5
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.6e-22 110.2 277 34.7
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 1.2e-11 74.7 99 47.5
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 2.3e-10 70.5 60 51.7


User provided reference genes

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