Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 1.8e-33 145.2 66 100.0
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 1.8e-17 92.0 65 63.1
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 1.8e-17 92.0 65 61.5
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 4.0e-17 90.9 65 60.0
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 5.2e-17 90.5 65 58.5
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 8.9e-17 89.7 65 60.0
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 8.9e-17 89.7 65 60.0
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 8.9e-17 89.7 65 58.5
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 8.9e-17 89.7 65 60.0
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 8.9e-17 89.7 65 60.0
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 1.2e-16 89.4 65 58.5
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 1.2e-16 89.4 65 58.5
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.2e-16 89.4 65 58.5
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 1.2e-16 89.4 65 56.9
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 1.2e-16 89.4 65 60.0
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 1.2e-16 89.4 65 60.0
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 1.5e-16 89.0 65 58.5
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 1.5e-16 89.0 65 61.5
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 1.5e-16 89.0 65 61.5
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 1.5e-16 89.0 65 58.5
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 1.5e-16 89.0 65 58.5
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 1.5e-16 89.0 65 58.5
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 1.5e-16 89.0 65 58.5
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 1.5e-16 89.0 65 58.5
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 1.5e-16 89.0 65 58.5
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 1.5e-16 89.0 65 58.5
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 1.5e-16 89.0 65 60.0
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 2.6e-16 88.2 65 58.5
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 2.6e-16 88.2 65 58.5
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 3.4e-16 87.8 65 60.0
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 3.4e-16 87.8 65 58.5
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 4.4e-16 87.4 65 58.5
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 4.4e-16 87.4 65 58.5
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 4.4e-16 87.4 65 58.5
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 4.4e-16 87.4 65 58.5
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 4.4e-16 87.4 65 56.9
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 4.4e-16 87.4 65 56.9
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 4.4e-16 87.4 65 60.0
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 4.4e-16 87.4 65 60.0
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 4.4e-16 87.4 65 56.9
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 5.7e-16 87.0 65 58.5
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 7.5e-16 86.7 62 59.7
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 7.5e-16 86.7 65 55.4
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 7.5e-16 86.7 65 58.5
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 7.5e-16 86.7 65 58.5
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 9.8e-16 86.3 65 56.9
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 9.8e-16 86.3 65 56.9
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 9.8e-16 86.3 65 55.4
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 9.8e-16 86.3 65 56.9
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 9.8e-16 86.3 65 56.9
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 9.8e-16 86.3 65 55.4
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 9.8e-16 86.3 65 58.5
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 9.8e-16 86.3 65 58.5
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.3e-15 85.9 65 56.9
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 1.7e-15 85.5 65 55.4
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 1.7e-15 85.5 65 58.5
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 1.7e-15 85.5 65 58.5
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 1.7e-15 85.5 65 56.9
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 1.7e-15 85.5 65 55.4
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 2.2e-15 85.1 65 55.4
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 2.2e-15 85.1 65 56.9
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 2.2e-15 85.1 65 56.9
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 2.2e-15 85.1 65 58.5
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 2.2e-15 85.1 65 58.5
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 2.2e-15 85.1 65 55.4
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 2.2e-15 85.1 65 55.4
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 3.7e-15 84.3 65 56.9
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 3.7e-15 84.3 65 56.9
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 3.7e-15 84.3 65 56.9
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 3.7e-15 84.3 65 56.9
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 3.7e-15 84.3 65 55.4
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 3.7e-15 84.3 65 55.4
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 3.7e-15 84.3 65 56.9
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 3.7e-15 84.3 65 55.4
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 56.9
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 4.9e-15 84.0 65 55.4
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 6.3e-15 83.6 65 55.4
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 6.3e-15 83.6 65 55.4
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 6.3e-15 83.6 65 55.4
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 6.3e-15 83.6 65 55.4
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 6.3e-15 83.6 65 55.4
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 6.3e-15 83.6 65 55.4
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 8.3e-15 83.2 65 55.4
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 8.3e-15 83.2 54 63.0
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 8.3e-15 83.2 65 55.4
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 8.3e-15 83.2 65 53.8
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 8.3e-15 83.2 65 53.8
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 8.3e-15 83.2 65 53.8
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 1.1e-14 82.8 65 52.3
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 1.1e-14 82.8 65 53.8
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 1.1e-14 82.8 65 53.8
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.1e-14 82.8 65 53.8
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.1e-14 82.8 65 55.4
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 1.4e-14 82.4 65 55.4
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 1.4e-14 82.4 65 53.8
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 1.8e-14 82.0 64 54.7
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 2.4e-14 81.6 65 53.8
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 3.1e-14 81.3 62 56.5
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 3.1e-14 81.3 65 55.4
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 3.1e-14 81.3 65 52.3
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 4.1e-14 80.9 65 52.3
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 4.1e-14 80.9 65 52.3
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 4.1e-14 80.9 65 53.8
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 7.0e-14 80.1 65 53.8
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 7.0e-14 80.1 65 53.8
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 7.0e-14 80.1 65 53.8
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 9.2e-14 79.7 65 53.8
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 1.2e-13 79.3 65 53.8
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.2e-13 79.3 65 53.8
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 1.6e-13 79.0 65 52.3
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 4.5e-13 77.4 65 50.8
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 1.3e-12 75.9 66 50.0
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 8.6e-12 73.2 53 52.8
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 4.3e-11 70.9 55 52.7
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 2.1e-10 68.6 60 53.3
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 5.2e-09 63.9 40 65.0
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 5.2e-09 63.9 40 65.0
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 5.2e-09 63.9 40 65.0
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 2.6e-08 61.6 46 58.7
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 7.5e-08 60.1 65 47.7


User provided reference genes

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