Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 0.0e+00 1077.0 549 100.0
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 1.9e-173 613.2 472 63.3
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 2.1e-172 609.8 480 61.7
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 6.2e-172 608.2 460 63.7
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 6.2e-172 608.2 593 56.3
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 6.2e-172 608.2 459 64.3
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 8.0e-172 607.8 458 63.5
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 2.3e-171 606.3 582 54.8
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 5.2e-171 605.1 463 63.5
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 6.8e-171 604.7 565 56.3
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 4.4e-170 602.1 503 59.4
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 7.5e-170 601.3 462 62.6
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 1.7e-169 600.1 542 56.5
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 2.2e-169 599.7 459 62.3
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 2.2e-169 599.7 575 55.7
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 2.9e-169 599.4 497 60.2
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 2.9e-169 599.4 496 60.9
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 3.7e-169 599.0 458 62.7
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 3.7e-169 599.0 496 60.7
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 4.9e-169 598.6 515 58.4
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.1e-168 597.4 507 60.0
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 1.4e-168 597.0 507 59.6
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.4e-168 597.0 460 62.2
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 2.4e-168 596.3 455 63.1
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 5.4e-168 595.1 569 55.0
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 5.4e-168 595.1 461 62.0
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 7.0e-168 594.7 507 59.4
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 7.0e-168 594.7 508 59.3
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 7.0e-168 594.7 503 59.2
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 2.1e-167 593.2 503 59.2
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 3.5e-167 592.4 494 59.1
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 4.6e-167 592.0 524 57.3
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 7.8e-167 591.3 507 57.8
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 1.0e-166 590.9 548 57.1
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 1.3e-166 590.5 444 63.5
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 1.7e-166 590.1 572 54.0
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 1.7e-166 590.1 510 59.2
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 1.7e-166 590.1 575 55.5
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 1.7e-166 590.1 526 56.8
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.7e-166 590.1 541 57.7
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 3.0e-166 589.3 567 55.0
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 3.0e-166 589.3 519 58.4
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 8.6e-166 587.8 518 57.7
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.9e-165 586.6 572 54.0
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 1.9e-165 586.6 462 61.3
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 3.3e-165 585.9 550 54.9
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 5.6e-165 585.1 439 63.3
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 5.6e-165 585.1 559 54.2
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 7.3e-165 584.7 487 59.1
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 7.3e-165 584.7 556 53.8
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 9.5e-165 584.3 542 55.7
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.2e-164 583.9 541 56.0
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 1.2e-164 583.9 559 54.6
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 1.2e-164 583.9 567 54.7
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 2.1e-164 583.2 496 58.7
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 2.1e-164 583.2 557 55.1
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 3.6e-164 582.4 538 55.6
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 3.6e-164 582.4 457 61.7
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 4.7e-164 582.0 548 55.5
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 6.2e-164 581.6 575 54.6
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 8.1e-164 581.3 560 54.6
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 1.1e-163 580.9 536 56.0
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.4e-163 580.5 555 53.5
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 1.8e-163 580.1 561 54.2
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 1.8e-163 580.1 454 61.5
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 1.8e-163 580.1 463 60.9
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 4.0e-163 578.9 560 54.5
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 4.0e-163 578.9 591 53.1
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 5.2e-163 578.6 475 60.2
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 5.2e-163 578.6 569 54.0
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 6.8e-163 578.2 552 54.0
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 1.2e-162 577.4 551 54.8
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 1.5e-162 577.0 497 57.5
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 2.0e-162 576.6 569 53.6
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 4.4e-162 575.5 578 53.8
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 4.4e-162 575.5 564 53.0
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 4.4e-162 575.5 518 57.7
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 7.5e-162 574.7 451 62.3
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 7.5e-162 574.7 534 56.6
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 9.9e-162 574.3 554 53.1
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 9.9e-162 574.3 476 59.0
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 9.9e-162 574.3 555 54.2
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 9.9e-162 574.3 448 62.5
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 1.3e-161 573.9 564 53.4
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 1.7e-161 573.5 536 54.7
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 2.9e-161 572.8 493 57.6
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 3.7e-161 572.4 547 54.8
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 3.7e-161 572.4 576 54.0
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 4.9e-161 572.0 564 54.3
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 6.4e-161 571.6 545 54.1
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 6.4e-161 571.6 567 53.1
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 1.1e-160 570.9 563 53.3
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 1.4e-160 570.5 499 57.9
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.9e-160 570.1 445 62.9
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.9e-160 570.1 454 60.8
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 7.1e-160 568.2 545 54.1
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 7.1e-160 568.2 592 52.5
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 1.6e-159 567.0 491 58.5
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 2.1e-159 566.6 530 55.5
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 3.5e-159 565.8 539 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.3e-158 563.9 485 57.7
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.3e-158 563.9 537 55.1
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 1.7e-158 563.5 533 54.8
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.7e-158 563.5 523 55.6
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 5.1e-158 562.0 568 53.7
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 2.1e-156 556.6 595 50.8
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 4.7e-156 555.4 454 60.1
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 2.4e-155 553.1 453 58.7
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 4.0e-155 552.4 591 50.8
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 4.0e-155 552.4 538 54.5
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 1.2e-154 550.8 436 60.3
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 9.9e-154 547.7 475 58.3
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 9.9e-154 547.7 456 59.4
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 4.9e-153 545.4 521 54.1
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.4e-152 543.9 483 56.9
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 1.9e-152 543.5 483 56.1
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 2.4e-152 543.1 639 46.9
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 4.2e-152 542.3 526 53.0
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 4.2e-152 542.3 576 51.6
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 2.1e-151 540.0 567 52.4
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 2.3e-150 536.6 532 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 3.0e-150 536.2 497 56.3
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 3.9e-150 535.8 459 58.0
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 5.6e-149 531.9 441 60.1
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 4.8e-148 528.9 560 51.2
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 2.6e-146 523.1 536 54.3
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.5e-141 507.3 396 62.6
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 4.3e-141 505.8 549 51.2
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 1.8e-139 500.4 425 58.4
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 5.3e-139 498.8 482 55.6
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 6.9e-139 498.4 517 53.2
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 2.7e-135 486.5 507 53.6
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 8.7e-134 481.5 518 50.4
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 7.6e-130 468.4 380 60.3
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 4.8e-124 449.1 434 54.4
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.4e-123 447.6 469 52.2
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 3.5e-119 433.0 484 48.3
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.2e-116 423.7 623 43.2
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 4.8e-116 422.5 455 49.9
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 3.9e-110 402.9 516 46.9
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.8e-108 396.7 331 58.0
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.5e-106 391.0 332 57.5
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 7.7e-106 388.7 597 42.5
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.1e-101 374.8 312 58.3
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 4.8e-100 369.4 378 50.5
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 9.1e-99 365.2 538 40.7
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 3.5e-98 363.2 451 47.5
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 2.9e-97 360.1 325 52.9
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 1.6e-82 311.2 327 54.4
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 7.2e-72 275.8 211 62.1
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 1.4e-70 271.6 300 49.7
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 2.6e-69 267.3 249 51.4
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 1.3e-68 265.0 302 52.0
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 2.0e-61 241.1 217 54.8
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 8.6e-57 225.7 638 30.4
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 3.7e-52 210.3 267 43.4
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 3.0e-49 200.7 259 48.6
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 1.9e-48 198.0 165 58.2
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 8.9e-38 162.5 200 46.0
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.2e-37 162.2 586 26.8
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 2.0e-37 161.4 184 45.1
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 7.6e-37 159.5 133 58.6
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.9e-37 159.1 105 70.5
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 2.9e-36 157.5 138 55.8
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 1.9e-35 154.8 132 57.6
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 1.9e-32 144.8 123 58.5
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 3.3e-32 144.1 158 48.7
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 3.6e-31 140.6 146 50.0
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 1.8e-30 138.3 101 64.4
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 2.1e-26 124.8 126 53.2
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 3.3e-24 117.5 74 73.0
SHI09317 Sapria himalayana HOM05D003665 ORTHO05D004387 3.8e-20 104.0 74 67.6
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 3.2e-19 100.9 65 75.4
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 2.3e-17 94.7 60 66.7
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 2.5e-16 91.3 120 45.8
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 3.3e-16 90.9 64 65.6
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 1.6e-15 88.6 50 80.0
VMungo0225G0001 Vigna mungo HOM05D003665 ORTHO05D004387 4.0e-14 84.0 61 63.9
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 1.3e-12 79.0 70 51.4
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 4.3e-08 63.9 40 77.5
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 5.7e-08 63.5 121 34.7


User provided reference genes

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