Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.1e-84 316.6 167 100.0
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 2.6e-41 172.6 164 55.5
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 1.0e-40 170.6 150 56.0
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 1.1e-39 167.2 150 54.0
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 2.5e-39 166.0 151 52.3
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.5e-39 166.0 163 52.8
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 4.2e-39 165.2 151 55.0
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 5.5e-39 164.9 150 54.7
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 9.3e-39 164.1 153 50.3
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.2e-38 163.7 163 51.5
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.7e-38 162.5 151 52.3
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 2.7e-38 162.5 151 53.6
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 2.7e-38 162.5 152 52.0
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 2.7e-38 162.5 151 53.6
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 3.6e-38 162.2 149 51.0
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.6e-38 161.8 151 53.0
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 6.1e-38 161.4 145 55.2
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 6.1e-38 161.4 152 50.7
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 7.9e-38 161.0 150 52.7
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 7.9e-38 161.0 151 53.6
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 7.9e-38 161.0 163 50.9
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.0e-37 160.6 150 53.3
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 1.4e-37 160.2 151 54.3
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.4e-37 160.2 151 53.0
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 1.8e-37 159.8 151 53.6
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.8e-37 159.8 150 52.7
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 2.3e-37 159.5 145 53.1
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 2.3e-37 159.5 165 49.1
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 2.3e-37 159.5 151 49.7
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 2.3e-37 159.5 151 52.3
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 3.0e-37 159.1 151 53.0
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.0e-37 159.1 170 50.6
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 3.9e-37 158.7 164 49.4
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.9e-37 158.7 162 50.6
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 3.9e-37 158.7 149 54.4
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 5.1e-37 158.3 151 50.3
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 6.7e-37 157.9 152 51.3
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 6.7e-37 157.9 150 51.3
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 8.8e-37 157.5 172 48.3
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.5e-36 156.8 151 49.7
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.5e-36 156.8 151 49.7
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.5e-36 156.8 153 51.0
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.9e-36 156.4 153 50.3
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 1.9e-36 156.4 165 47.9
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.9e-36 156.4 151 51.0
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 2.5e-36 156.0 145 52.4
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 2.5e-36 156.0 147 51.0
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 3.3e-36 155.6 153 47.7
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 3.3e-36 155.6 152 50.0
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.3e-36 155.6 158 50.0
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 4.3e-36 155.2 161 49.1
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 4.3e-36 155.2 145 52.4
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 5.7e-36 154.8 144 52.8
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 5.7e-36 154.8 145 51.7
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 5.7e-36 154.8 163 49.1
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 7.4e-36 154.5 148 51.4
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 7.4e-36 154.5 145 51.0
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 7.4e-36 154.5 145 51.0
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 7.4e-36 154.5 152 50.0
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 7.4e-36 154.5 148 51.4
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 7.4e-36 154.5 152 49.3
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 7.4e-36 154.5 145 52.4
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 7.4e-36 154.5 150 50.0
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 9.7e-36 154.1 148 50.0
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 9.7e-36 154.1 148 50.0
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 9.7e-36 154.1 145 51.7
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 9.7e-36 154.1 164 50.6
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 1.3e-35 153.7 151 48.3
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.3e-35 153.7 150 51.3
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 1.3e-35 153.7 149 49.0
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.7e-35 153.3 148 50.7
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.7e-35 153.3 152 47.4
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 1.7e-35 153.3 163 48.5
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 2.2e-35 152.9 164 50.0
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 2.2e-35 152.9 145 50.3
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 2.2e-35 152.9 144 52.1
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 2.2e-35 152.9 151 50.3
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 2.2e-35 152.9 151 51.0
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 2.8e-35 152.5 145 50.3
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 2.8e-35 152.5 145 50.3
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 2.8e-35 152.5 150 50.7
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 2.8e-35 152.5 148 50.7
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 3.7e-35 152.1 148 49.3
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 3.7e-35 152.1 148 49.3
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 3.7e-35 152.1 148 49.3
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 3.7e-35 152.1 145 51.7
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 4.8e-35 151.8 148 51.4
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 6.3e-35 151.4 154 48.7
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 6.3e-35 151.4 151 49.7
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.1e-34 150.6 144 50.7
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.4e-34 150.2 151 48.3
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.4e-34 150.2 153 47.1
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 2.4e-34 149.4 146 47.9
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 3.1e-34 149.1 150 49.3
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 4.1e-34 148.7 163 46.6
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 6.9e-34 147.9 150 49.3
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 6.9e-34 147.9 164 48.2
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.2e-33 147.1 152 48.0
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.0e-33 146.4 153 47.7
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 2.0e-33 146.4 147 48.3
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.6e-33 146.0 153 47.1
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.6e-33 146.0 163 46.0
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 2.6e-33 146.0 148 50.7
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 3.4e-33 145.6 153 47.1
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 3.4e-33 145.6 140 49.3
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 3.4e-33 145.6 151 47.0
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 4.5e-33 145.2 152 46.7
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 5.9e-33 144.8 145 50.3
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 7.7e-33 144.4 134 53.7
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 7.7e-33 144.4 145 50.3
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 7.7e-33 144.4 142 46.5
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 1.0e-32 144.1 141 50.4
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 1.0e-32 144.1 145 50.3
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.0e-32 144.1 145 50.3
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.7e-32 143.3 152 46.7
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.7e-32 143.3 152 46.7
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.7e-32 143.3 151 49.7
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 2.2e-32 142.9 133 51.9
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.2e-32 142.9 153 46.4
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.2e-32 142.9 152 46.1
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 5.0e-32 141.7 146 50.0
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 8.5e-32 141.0 145 49.0
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.1e-31 140.6 156 48.7
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.4e-31 140.2 162 43.2
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 2.5e-31 139.4 147 47.6
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.5e-31 139.4 147 46.3
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.2e-31 139.0 150 50.0
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 3.2e-31 139.0 147 47.6
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 5.5e-31 138.3 173 43.4
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.6e-30 136.7 183 41.0
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 2.1e-30 136.3 145 46.2
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.7e-30 136.0 138 47.8
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.4e-29 133.7 144 48.6
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 2.3e-29 132.9 170 42.9
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 5.1e-29 131.7 148 45.3
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.1e-28 130.6 220 36.8
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 7.4e-28 127.9 119 52.9
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 2.2e-27 126.3 116 51.7
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 6.3e-27 124.8 116 52.6
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 8.2e-27 124.4 113 52.2
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.8e-26 123.2 117 52.1
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.8e-26 123.2 117 53.0
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 9.1e-26 120.9 117 49.6
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 2.0e-25 119.8 116 49.1
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 2.0e-25 119.8 118 49.2
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 2.6e-25 119.4 132 48.5
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.0e-24 117.5 119 47.9
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 2.7e-22 109.4 114 48.2
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 3.6e-22 109.0 106 50.0
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 3.9e-21 105.5 110 45.5
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 1.5e-20 103.6 127 44.1
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 2.6e-20 102.8 82 59.8
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 5.7e-20 101.7 114 44.7
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.3e-16 90.5 108 38.9
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.0e-13 80.9 79 49.4
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 8.8e-13 77.8 86 46.5
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.5e-12 77.0 98 41.8
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 7.0e-10 68.2 151 30.5
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 5.0e-08 62.0 90 37.8


User provided reference genes

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