Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.7e-79 299.3 153 100.0
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.2e-63 245.7 153 85.6
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 7.0e-57 224.2 149 72.5
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 5.5e-54 214.5 151 70.9
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 2.7e-48 195.7 153 61.4
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.3e-47 193.4 150 63.3
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 1.3e-47 193.4 150 63.3
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-47 193.0 150 63.3
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 2.2e-47 192.6 150 63.3
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.9e-47 192.2 150 62.7
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.9e-47 192.2 148 62.8
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 3.8e-47 191.8 150 62.7
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 5.0e-47 191.4 150 62.7
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 5.0e-47 191.4 150 60.7
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 5.0e-47 191.4 150 60.7
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 5.0e-47 191.4 150 60.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 5.0e-47 191.4 153 58.8
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 6.5e-47 191.0 150 62.0
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 6.5e-47 191.0 150 61.3
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.1e-46 190.3 155 61.9
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.1e-46 190.3 150 62.0
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.1e-46 190.3 150 61.3
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.5e-46 189.9 150 60.7
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.9e-46 189.5 151 61.6
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.9e-46 189.5 151 61.6
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 2.5e-46 189.1 150 60.7
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.5e-46 189.1 151 62.3
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 3.2e-46 188.7 151 61.6
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 3.2e-46 188.7 150 61.3
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 3.2e-46 188.7 153 61.4
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.2e-46 188.3 151 60.9
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 4.2e-46 188.3 150 60.0
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 4.2e-46 188.3 150 61.3
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 5.5e-46 188.0 151 61.6
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 5.5e-46 188.0 150 60.7
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 7.2e-46 187.6 150 59.3
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 7.2e-46 187.6 150 60.7
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 9.4e-46 187.2 150 58.7
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 9.4e-46 187.2 151 60.9
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 9.4e-46 187.2 150 60.7
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 9.4e-46 187.2 150 62.7
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 9.4e-46 187.2 150 60.7
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 9.4e-46 187.2 150 60.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.2e-45 186.8 149 59.7
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.2e-45 186.8 151 60.9
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 1.2e-45 186.8 151 58.9
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.2e-45 186.8 149 61.1
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.2e-45 186.8 150 60.7
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.2e-45 186.8 150 59.3
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.2e-45 186.8 151 60.3
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.2e-45 186.8 151 60.3
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.2e-45 186.8 150 59.3
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.6e-45 186.4 156 60.9
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.6e-45 186.4 147 62.6
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.6e-45 186.4 151 60.9
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.6e-45 186.4 149 61.1
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.6e-45 186.4 149 61.1
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.6e-45 186.4 150 60.0
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.6e-45 186.4 149 60.4
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.1e-45 186.0 150 61.3
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 2.1e-45 186.0 150 60.0
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.7e-45 185.7 151 60.3
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 2.7e-45 185.7 150 59.3
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.7e-45 185.7 147 63.3
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.7e-45 185.7 147 63.3
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.7e-45 185.7 149 61.1
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.7e-45 185.7 147 63.3
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 2.7e-45 185.7 150 58.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 3.6e-45 185.3 151 59.6
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 4.7e-45 184.9 150 59.3
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 6.1e-45 184.5 156 59.6
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 6.1e-45 184.5 151 59.6
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 6.1e-45 184.5 148 59.5
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 6.1e-45 184.5 150 58.0
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 6.1e-45 184.5 150 60.0
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 8.0e-45 184.1 151 59.6
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 8.0e-45 184.1 155 58.7
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 8.0e-45 184.1 150 58.7
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.4e-44 183.3 150 58.0
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.4e-44 183.3 149 59.1
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.8e-44 183.0 150 60.0
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.8e-44 183.0 150 58.7
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.3e-44 182.6 150 60.7
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 3.0e-44 182.2 150 58.7
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 3.0e-44 182.2 151 57.6
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 3.0e-44 182.2 150 58.0
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.0e-44 181.8 147 61.2
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 5.2e-44 181.4 150 58.0
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 8.8e-44 180.6 150 57.3
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 8.8e-44 180.6 150 55.3
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 8.8e-44 180.6 153 57.5
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 8.8e-44 180.6 149 59.1
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.2e-43 180.3 150 55.3
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.2e-43 180.3 151 59.6
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.2e-43 180.3 150 57.3
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.5e-43 179.9 155 58.1
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.0e-43 179.5 150 58.7
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 5.7e-43 177.9 149 56.4
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.7e-42 176.4 155 57.4
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.7e-42 176.4 155 57.4
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.1e-41 173.7 154 58.4
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.1e-41 173.7 154 58.4
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.1e-41 173.7 153 56.9
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.8e-41 172.9 150 57.3
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.4e-41 171.4 166 54.2
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.2e-40 170.2 151 55.6
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.2e-40 170.2 142 57.7
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.6e-40 169.9 142 57.7
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.0e-40 169.5 152 56.6
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.5e-40 168.3 161 52.8
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 5.9e-40 167.9 150 55.3
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.0e-39 167.2 192 46.9
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.3e-39 166.8 150 54.7
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.7e-39 166.4 150 54.0
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.7e-39 166.4 150 54.0
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.3e-39 166.0 164 52.4
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.8e-39 165.2 141 56.0
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.0e-39 164.9 150 54.0
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 6.6e-39 164.5 119 68.1
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 6.6e-39 164.5 156 55.8
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 8.6e-39 164.1 152 54.6
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.1e-38 163.7 152 54.6
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.1e-38 163.7 150 53.3
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 9.5e-38 160.6 123 61.0
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.6e-37 158.7 147 56.5
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 6.1e-37 157.9 150 54.7
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 6.1e-37 157.9 123 64.2
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 6.1e-37 157.9 132 60.6
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 2.9e-34 149.1 154 48.7
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 8.3e-34 147.5 124 58.9
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 9.2e-33 144.1 120 63.3
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.3e-31 139.4 110 60.9
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 2.5e-30 136.0 114 58.8
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.6e-29 133.3 109 63.3
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 6.8e-28 127.9 104 61.5
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 9.8e-27 124.0 150 44.7
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.2e-26 122.9 151 45.0
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 8.3e-26 120.9 104 60.6
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 7.3e-22 107.8 87 56.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.2e-19 100.5 147 40.8
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.3e-18 97.1 89 52.8
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.7e-18 96.7 123 41.5
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.9e-18 95.9 150 34.7
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 8.6e-15 84.3 139 34.5
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.8e-12 76.6 133 33.8
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 7.6e-11 71.2 48 60.4
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 6.4e-10 68.2 48 58.3
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 6.4e-10 68.2 59 62.7
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.2e-08 63.9 47 59.6
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 2.1e-08 63.2 68 44.1
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 3.5e-08 62.4 47 59.6
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.5e-06 57.0 53 54.7


User provided reference genes

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