Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 3.7e-111 404.8 198 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 6.9e-65 251.1 198 57.1
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 5.8e-64 248.1 198 53.5
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 9.6e-59 230.7 198 52.5
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.1e-58 229.6 198 52.0
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 3.7e-58 228.8 198 53.5
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 8.2e-58 227.6 198 51.5
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.4e-57 226.9 198 53.0
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 1.4e-57 226.9 198 53.5
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 2.4e-57 226.1 196 52.0
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 5.3e-57 224.9 198 50.0
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 6.9e-57 224.6 198 52.0
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.2e-56 223.8 197 51.8
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 2.0e-56 223.0 198 50.5
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 2.0e-56 223.0 198 53.0
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 2.6e-56 222.6 198 51.5
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 3.4e-56 222.2 198 51.5
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 3.4e-56 222.2 198 51.0
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 4.5e-56 221.9 198 49.5
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.5e-56 221.9 198 52.0
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.5e-56 221.9 198 52.0
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 4.5e-56 221.9 198 52.0
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 5.9e-56 221.5 198 52.0
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 5.9e-56 221.5 198 50.5
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 5.9e-56 221.5 198 53.0
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.0e-55 220.7 198 50.0
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 1.0e-55 220.7 198 50.0
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-55 220.3 198 51.0
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.3e-55 220.3 198 50.0
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.3e-55 220.3 198 50.0
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 2.2e-55 219.5 198 49.5
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 2.2e-55 219.5 198 50.5
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 2.2e-55 219.5 198 50.5
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 2.9e-55 219.2 198 50.0
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 2.9e-55 219.2 198 49.5
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 2.9e-55 219.2 198 51.5
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 5.0e-55 218.4 198 50.0
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 5.0e-55 218.4 198 49.0
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 5.0e-55 218.4 198 49.5
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 6.5e-55 218.0 198 49.0
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 6.5e-55 218.0 198 51.0
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 1.1e-54 217.2 198 49.0
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 1.1e-54 217.2 198 49.0
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 1.1e-54 217.2 198 51.5
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.1e-54 217.2 198 49.0
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.1e-54 217.2 198 50.0
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.1e-54 217.2 198 50.0
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.9e-54 216.5 198 49.0
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.9e-54 216.5 198 50.0
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.9e-54 216.5 198 49.0
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 3.2e-54 215.7 198 50.0
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 5.5e-54 214.9 198 49.0
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 9.3e-54 214.2 198 50.0
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-53 213.8 198 47.5
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.6e-53 213.4 200 48.0
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.6e-53 213.4 198 47.5
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.6e-53 213.4 198 49.0
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 2.1e-53 213.0 198 48.5
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.7e-53 212.6 198 48.5
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.7e-53 212.6 198 49.0
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.7e-53 212.6 198 49.0
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 2.7e-53 212.6 198 49.0
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 2.7e-53 212.6 198 47.5
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 3.5e-53 212.2 198 48.5
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 6.1e-53 211.5 199 49.2
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 6.1e-53 211.5 198 48.0
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 7.9e-53 211.1 199 48.7
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.3e-52 210.3 198 50.0
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.3e-52 210.3 200 49.5
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 2.3e-52 209.5 198 47.5
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.0e-52 209.1 198 49.5
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 3.0e-52 209.1 198 48.5
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 3.9e-52 208.8 198 48.0
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 5.1e-52 208.4 198 48.5
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 6.7e-52 208.0 198 47.0
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 6.7e-52 208.0 198 48.0
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 6.7e-52 208.0 198 47.0
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 8.7e-52 207.6 198 49.0
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.1e-51 207.2 198 47.0
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.5e-51 206.8 198 48.5
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.3e-51 205.7 206 46.1
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 4.3e-51 205.3 216 44.9
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.3e-51 205.3 198 46.0
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 5.7e-51 204.9 172 55.2
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 7.4e-51 204.5 198 48.5
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.2e-50 203.0 206 45.1
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 4.8e-50 201.8 192 50.5
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 4.8e-50 201.8 241 42.3
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 6.3e-50 201.4 219 43.8
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 8.2e-50 201.1 198 45.5
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 8.2e-50 201.1 216 44.9
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 1.1e-49 200.7 198 46.5
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.1e-49 200.7 234 42.3
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.4e-49 200.3 234 42.3
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.8e-49 199.9 198 45.5
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 3.1e-49 199.1 169 53.8
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 4.1e-49 198.7 233 42.5
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 9.0e-49 197.6 198 44.9
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.0e-48 196.4 236 41.9
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 2.6e-48 196.1 160 56.9
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.0e-47 194.1 198 45.5
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.3e-47 193.7 198 42.9
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.7e-47 193.4 180 49.4
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 1.7e-47 193.4 253 41.1
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 2.5e-46 189.5 169 52.1
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.2e-45 187.2 169 49.7
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 2.7e-45 186.0 198 44.9
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 4.6e-45 185.3 198 46.0
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 2.8e-42 176.0 172 44.2
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 5.0e-39 165.2 161 47.2
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 8.5e-39 164.5 143 55.2
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 2.5e-38 162.9 191 41.9
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 3.2e-38 162.5 198 42.4
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 1.2e-37 160.6 148 47.3
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 2.7e-37 159.5 145 47.6
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.1e-35 154.1 138 46.4
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.7e-34 150.2 148 42.6
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 4.8e-34 148.7 134 51.5
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.8e-33 146.7 130 50.8
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.1e-33 146.0 115 50.4
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.2e-32 144.1 115 50.4
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 3.8e-31 139.0 123 49.6
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 4.2e-30 135.6 118 49.2
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 8.0e-29 131.3 142 45.1
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 6.7e-28 128.3 145 42.1
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 2.6e-27 126.3 188 38.8
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 3.3e-27 125.9 113 47.8
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 3.3e-27 125.9 113 51.3
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.8e-25 120.2 109 54.1
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.9e-22 110.2 143 33.6
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 2.5e-22 109.8 96 50.0
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 3.1e-17 92.8 190 26.8
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 4.1e-17 92.4 83 51.8
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 2.0e-16 90.1 127 36.2
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 5.9e-16 88.6 58 60.3
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 1.7e-15 87.0 81 53.1
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 2.9e-15 86.3 77 54.5
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 3.8e-15 85.9 77 55.8
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 8.5e-15 84.7 77 53.2
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.9e-14 83.6 77 55.8
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.2e-14 82.8 77 51.9
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 7.2e-14 81.6 77 53.2
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.6e-13 80.5 77 53.2
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.6e-13 80.5 77 53.2
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 2.1e-13 80.1 119 33.6
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 5.2e-12 75.5 91 44.0
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 7.5e-11 71.6 94 38.3
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 3.7e-10 69.3 99 33.3
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 4.9e-10 68.9 69 49.3
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.9e-10 68.9 74 48.6
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 9.2e-09 64.7 72 47.2
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 3.5e-08 62.8 59 45.8
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 5.0e-07 58.9 143 30.1
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 8.6e-07 58.2 55 43.6
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 8.6e-07 58.2 60 45.0
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 3.3e-06 56.2 55 38.2
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 7.3e-06 55.1 49 57.1
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 9.5e-06 54.7 58 41.4


User provided reference genes

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