Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 4.7e-160 567.8 279 100.0
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 3.1e-79 299.3 277 52.3
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 4.1e-79 298.9 271 54.2
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 4.5e-78 295.4 274 53.3
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 1.1e-76 290.8 276 49.6
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 1.0e-74 284.3 279 50.5
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 2.3e-74 283.1 279 49.5
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 3.9e-74 282.3 276 48.6
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 1.5e-73 280.4 277 50.2
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 2.0e-73 280.0 271 50.6
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 2.0e-73 280.0 277 50.9
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 2.6e-73 279.6 279 48.7
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 4.4e-73 278.9 274 48.9
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 5.7e-73 278.5 275 49.8
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 7.4e-73 278.1 279 48.4
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 7.4e-73 278.1 274 49.3
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 9.7e-73 277.7 275 49.5
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 9.7e-73 277.7 279 49.1
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.7e-72 276.9 275 49.1
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 1.7e-72 276.9 274 48.9
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 1.7e-72 276.9 277 50.5
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.2e-72 276.6 279 49.1
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 2.2e-72 276.6 275 51.3
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 3.7e-72 275.8 280 49.3
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.1e-71 274.2 277 48.7
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.4e-71 273.9 279 48.0
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 1.8e-71 273.5 279 48.4
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 2.4e-71 273.1 279 48.4
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 3.1e-71 272.7 274 48.5
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 3.1e-71 272.7 279 48.7
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 3.1e-71 272.7 279 48.4
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 3.1e-71 272.7 280 49.3
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 4.1e-71 272.3 279 47.7
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 4.1e-71 272.3 279 48.4
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 4.1e-71 272.3 276 48.6
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 4.1e-71 272.3 275 48.4
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 4.1e-71 272.3 276 48.9
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 4.1e-71 272.3 279 48.0
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 5.3e-71 271.9 279 47.3
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 6.9e-71 271.6 279 47.0
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 6.9e-71 271.6 271 49.8
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 6.9e-71 271.6 279 48.0
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 9.1e-71 271.2 279 47.7
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 9.1e-71 271.2 279 47.3
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 9.1e-71 271.2 279 47.7
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 1.2e-70 270.8 280 48.2
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 1.2e-70 270.8 279 48.4
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 2.0e-70 270.0 274 49.3
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 2.0e-70 270.0 279 47.0
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 2.0e-70 270.0 279 47.0
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 2.6e-70 269.6 279 47.0
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 2.6e-70 269.6 279 47.0
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 2.6e-70 269.6 279 47.0
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.6e-70 269.6 275 48.0
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 3.4e-70 269.2 275 48.4
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 3.4e-70 269.2 279 48.0
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 4.5e-70 268.9 279 46.6
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 5.9e-70 268.5 279 46.6
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 5.9e-70 268.5 279 47.3
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 7.7e-70 268.1 279 47.3
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 7.7e-70 268.1 279 48.0
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 2.2e-69 266.5 268 48.5
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 2.9e-69 266.2 279 47.0
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 2.9e-69 266.2 279 46.6
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 2.9e-69 266.2 276 48.6
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.9e-69 266.2 275 48.0
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 3.8e-69 265.8 295 45.8
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 5.0e-69 265.4 274 48.9
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 6.5e-69 265.0 273 47.3
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 8.5e-69 264.6 279 46.2
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 1.1e-68 264.2 279 47.7
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.1e-68 264.2 274 47.1
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 4.2e-68 262.3 276 49.3
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 5.5e-68 261.9 279 48.0
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 7.2e-68 261.5 279 46.2
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 9.4e-68 261.2 290 45.9
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 1.2e-67 260.8 274 47.1
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 2.7e-67 259.6 272 46.3
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 2.7e-67 259.6 279 47.3
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 3.6e-67 259.2 300 45.0
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.7e-67 258.8 280 48.2
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 1.0e-66 257.7 271 46.1
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 1.0e-66 257.7 280 46.8
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.0e-66 257.7 279 47.0
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.4e-66 257.3 282 48.6
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 1.4e-66 257.3 275 45.5
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 3.0e-66 256.1 279 47.7
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 3.9e-66 255.8 274 47.1
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 5.2e-66 255.4 274 44.9
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 8.8e-66 254.6 274 45.3
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 2.6e-65 253.1 290 43.8
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 4.4e-65 252.3 259 50.2
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 8.2e-64 248.1 239 49.4
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 1.1e-63 247.7 251 49.0
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 3.1e-63 246.1 315 42.5
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 3.1e-63 246.1 279 44.8
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 5.3e-63 245.4 242 50.0
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.0e-61 241.1 279 45.2
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 7.2e-60 235.0 318 40.6
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 1.0e-58 231.1 296 41.9
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 3.1e-55 219.5 242 45.9
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 5.9e-54 215.3 304 39.5
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 4.4e-49 199.1 270 40.7
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 1.7e-48 197.2 270 40.4
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 6.3e-48 195.3 273 40.3
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 1.6e-46 190.7 279 38.7
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 1.2e-43 181.0 154 52.6
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 1.8e-39 167.2 208 42.8
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 4.1e-39 166.0 208 43.3
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 7.0e-39 165.2 158 49.4
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 5.6e-36 155.6 175 48.0
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 7.3e-36 155.2 270 36.7
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 1.4e-34 151.0 182 44.0
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 2.3e-34 150.2 201 39.8
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 6.4e-32 142.1 169 46.2
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.6e-25 120.2 118 49.2
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 2.2e-24 117.1 290 34.5
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 1.1e-23 114.8 168 39.9
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 6.0e-22 109.0 75 58.7
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 1.0e-21 108.2 71 60.6
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 6.6e-21 105.5 88 51.1
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.5e-20 104.4 71 59.2
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.9e-20 104.0 71 59.2
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 3.3e-20 103.2 71 57.7
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 3.0e-13 80.1 78 47.4
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 1.5e-12 77.8 124 37.9
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 1.6e-11 74.3 287 26.5
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 2.4e-10 70.5 234 29.1
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 1.2e-09 68.2 48 56.2
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 2.6e-09 67.0 95 41.1
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.3e-08 64.7 60 50.0
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 2.4e-07 60.5 82 37.8
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 5.4e-07 59.3 66 50.0
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 5.4e-07 59.3 41 61.0


User provided reference genes

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