Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 0.0e+00 1129.8 570 100.0
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 5.1e-121 439.1 581 43.4
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 1.5e-117 427.6 609 42.2
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 3.0e-113 413.3 573 40.7
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 1.7e-111 407.5 581 39.8
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 3.7e-111 406.4 577 40.0
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 6.3e-111 405.6 581 39.9
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 1.4e-110 404.4 575 39.3
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 2.4e-110 403.7 582 38.8
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.2e-109 401.4 575 39.5
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 2.6e-109 400.2 577 39.9
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 6.5e-108 395.6 575 39.1
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 1.1e-107 394.8 579 38.9
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 1.9e-107 394.0 579 39.6
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 7.2e-107 392.1 584 39.7
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 1.6e-106 391.0 577 38.8
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 2.1e-106 390.6 573 38.0
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 2.1e-106 390.6 577 38.8
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 2.7e-106 390.2 585 39.8
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 3.6e-106 389.8 577 39.3
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 6.1e-106 389.0 581 40.6
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 6.1e-106 389.0 580 39.1
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 6.1e-106 389.0 571 39.2
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 6.1e-106 389.0 575 39.0
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.0e-105 388.3 578 38.4
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 1.0e-105 388.3 574 37.3
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 2.3e-105 387.1 575 39.3
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 3.0e-105 386.7 577 39.3
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 5.2e-105 386.0 578 38.4
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 2.0e-104 384.0 587 38.0
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 2.6e-104 383.6 578 37.9
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 4.4e-104 382.9 583 37.9
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 4.4e-104 382.9 573 36.8
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 4.4e-104 382.9 573 37.3
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 5.7e-104 382.5 573 37.2
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 7.5e-104 382.1 586 38.9
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 7.5e-104 382.1 584 38.4
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 9.7e-104 381.7 575 37.7
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 9.7e-104 381.7 593 39.8
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 1.3e-103 381.3 573 39.3
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 1.3e-103 381.3 578 39.8
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 2.2e-103 380.6 573 37.2
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 2.2e-103 380.6 574 38.3
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 2.2e-103 380.6 581 39.8
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 4.8e-103 379.4 573 37.2
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 8.2e-103 378.6 576 38.9
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 8.2e-103 378.6 580 37.9
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 8.2e-103 378.6 583 39.6
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 1.8e-102 377.5 586 37.0
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 1.8e-102 377.5 582 36.6
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 1.8e-102 377.5 579 38.3
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 5.3e-102 375.9 580 38.3
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 7.0e-102 375.6 576 38.7
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 1.2e-101 374.8 572 38.3
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 2.7e-101 373.6 579 38.0
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 3.5e-101 373.2 594 38.0
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 3.5e-101 373.2 575 38.4
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 5.9e-101 372.5 574 38.7
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 7.7e-101 372.1 573 38.7
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 1.7e-100 370.9 584 38.4
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 1.1e-99 368.2 573 36.5
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 1.9e-99 367.5 574 38.3
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 1.9e-99 367.5 576 38.0
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.9e-99 367.5 576 38.2
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 2.5e-99 367.1 577 36.7
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 2.5e-99 367.1 582 36.8
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 4.2e-99 366.3 574 38.2
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 5.5e-99 365.9 576 37.0
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 9.4e-99 365.2 557 38.8
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 9.4e-99 365.2 583 37.4
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 2.1e-98 364.0 533 39.4
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 2.7e-98 363.6 574 37.1
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 6.1e-98 362.5 570 36.3
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 1.4e-97 361.3 577 36.9
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 1.4e-97 361.3 570 37.7
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 1.4e-97 361.3 588 36.9
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 2.3e-97 360.5 575 37.0
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 8.8e-97 358.6 556 37.9
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 8.8e-97 358.6 579 37.3
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 1.2e-96 358.2 560 38.2
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 2.0e-96 357.5 569 37.1
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 3.4e-96 356.7 572 37.1
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 1.3e-95 354.8 573 37.2
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 1.7e-95 354.4 576 37.0
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 3.7e-95 353.2 574 36.4
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 4.8e-95 352.8 579 37.7
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 2.4e-94 350.5 558 38.9
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 1.2e-93 348.2 581 36.3
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 3.5e-93 346.7 577 36.6
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 7.7e-93 345.5 511 39.9
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 7.7e-93 345.5 638 34.3
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.5e-91 340.5 574 36.4
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 4.2e-91 339.7 574 36.4
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 5.5e-91 339.3 569 36.9
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 2.1e-90 337.4 536 37.5
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 3.6e-90 336.7 582 35.9
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 6.1e-90 335.9 563 35.0
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 8.0e-90 335.5 544 38.1
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 1.1e-86 325.1 552 34.6
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 4.1e-86 323.2 573 35.3
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 1.1e-83 315.1 569 34.8
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.6e-82 311.2 443 42.2
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 2.1e-82 310.8 350 45.7
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 1.2e-80 305.1 583 33.8
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 5.7e-80 302.8 345 45.8
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 7.8e-77 292.4 524 36.3
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.3e-76 291.6 436 40.1
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 3.0e-76 290.4 543 34.4
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.9e-75 287.7 623 32.3
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 8.0e-74 282.3 580 32.6
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 1.4e-73 281.6 459 37.0
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.6e-72 277.3 564 31.9
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 3.7e-71 273.5 451 35.5
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 1.0e-68 265.4 557 33.8
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 1.9e-62 244.6 400 36.5
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 5.4e-62 243.0 581 31.2
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 7.6e-56 222.6 354 36.2
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 6.6e-52 209.5 498 30.9
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 8.1e-50 202.6 314 37.3
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 2.2e-47 194.5 319 36.1
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 1.1e-43 182.2 248 38.7
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 3.5e-37 160.6 238 39.9
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 6.0e-37 159.8 230 37.8
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 2.3e-36 157.9 182 44.5
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 7.9e-29 132.9 285 32.3
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 1.9e-27 128.3 155 45.2
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 2.1e-26 124.8 604 22.8
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 2.4e-25 121.3 263 35.7
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 6.5e-23 113.2 584 23.6
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 3.0e-20 104.4 153 41.2
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 8.2e-18 96.3 170 35.3
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 1.0e-07 62.8 61 45.9
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 2.2e-07 61.6 196 26.0
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 1.4e-06 58.9 98 39.8


User provided reference genes

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