Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 5.3e-90 334.3 170 100.0
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 4.7e-54 214.9 166 61.4
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 4.7e-54 214.9 143 69.2
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 2.3e-53 212.6 167 62.9
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 2.3e-53 212.6 167 62.9
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 5.2e-53 211.5 169 60.4
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 6.8e-53 211.1 167 62.3
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 6.8e-53 211.1 167 62.3
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 8.9e-53 210.7 167 60.5
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 8.9e-53 210.7 167 62.3
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 8.9e-53 210.7 167 60.5
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 8.9e-53 210.7 167 60.5
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 8.9e-53 210.7 165 60.6
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 1.2e-52 210.3 168 64.3
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 1.2e-52 210.3 167 60.5
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 1.5e-52 209.9 167 60.5
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 2.6e-52 209.1 162 61.1
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 3.4e-52 208.8 165 58.8
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 3.4e-52 208.8 165 58.8
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 4.4e-52 208.4 159 66.7
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 4.4e-52 208.4 163 62.6
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 5.7e-52 208.0 168 60.1
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 7.5e-52 207.6 167 59.3
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 7.5e-52 207.6 158 62.0
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 9.8e-52 207.2 168 63.7
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 9.8e-52 207.2 167 59.3
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 9.8e-52 207.2 167 59.3
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 9.8e-52 207.2 167 59.3
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 1.3e-51 206.8 165 61.2
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 1.3e-51 206.8 169 59.8
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 1.7e-51 206.5 160 62.5
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 3.7e-51 205.3 170 58.8
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 4.9e-51 204.9 170 61.2
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 6.4e-51 204.5 169 58.6
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 8.3e-51 204.1 165 60.0
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 8.3e-51 204.1 165 60.0
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 8.3e-51 204.1 165 60.0
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 1.4e-50 203.4 166 60.2
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 2.4e-50 202.6 168 58.9
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 3.2e-50 202.2 169 57.4
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 3.2e-50 202.2 156 61.5
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 4.1e-50 201.8 167 58.7
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 4.1e-50 201.8 158 62.0
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 5.4e-50 201.4 157 60.5
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 5.4e-50 201.4 145 62.1
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 7.0e-50 201.1 164 61.6
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 9.2e-50 200.7 148 62.2
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 1.2e-49 200.3 171 59.1
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 1.2e-49 200.3 157 61.1
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 1.6e-49 199.9 160 58.8
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.6e-49 199.9 140 65.7
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 1.6e-49 199.9 168 58.3
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 2.0e-49 199.5 161 61.5
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 2.0e-49 199.5 155 60.0
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 2.0e-49 199.5 150 61.3
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 2.0e-49 199.5 150 61.3
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 2.7e-49 199.1 148 64.9
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 4.6e-49 198.4 157 60.5
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 1.0e-48 197.2 163 60.1
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 3.0e-48 195.7 171 55.0
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 3.0e-48 195.7 164 57.3
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 6.6e-48 194.5 159 58.5
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 6.6e-48 194.5 155 58.1
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 8.6e-48 194.1 160 57.5
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 8.6e-48 194.1 155 58.7
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 1.9e-47 193.0 147 62.6
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 3.3e-47 192.2 167 56.3
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 7.3e-47 191.0 155 58.1
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 7.3e-47 191.0 162 57.4
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 9.5e-47 190.7 165 59.4
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 1.2e-46 190.3 161 57.8
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 1.2e-46 190.3 174 55.2
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 2.1e-46 189.5 149 62.4
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 1.8e-45 186.4 154 58.4
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 2.3e-45 186.0 168 53.6
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 2.3e-45 186.0 147 60.5
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 6.8e-45 184.5 165 57.6
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 1.2e-44 183.7 162 55.6
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 1.5e-44 183.3 161 55.3
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 1.5e-44 183.3 168 56.0
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 1.5e-44 183.3 168 55.4
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 1.5e-44 183.3 157 56.7
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 2.6e-44 182.6 155 56.8
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 3.4e-44 182.2 163 54.6
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 3.4e-44 182.2 169 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 4.4e-44 181.8 163 58.9
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 5.8e-44 181.4 169 55.6
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.8e-44 181.4 167 52.7
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 9.8e-44 180.6 168 55.4
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 1.3e-43 180.3 161 55.9
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 1.3e-43 180.3 147 58.5
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.3e-43 180.3 167 52.7
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 2.2e-43 179.5 157 55.4
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.9e-43 179.1 167 52.1
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 2.9e-43 179.1 168 54.2
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 2.9e-43 179.1 167 52.1
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 4.9e-43 178.3 163 54.0
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 6.4e-43 177.9 167 52.1
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 6.4e-43 177.9 167 52.1
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 8.3e-43 177.6 140 60.7
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 8.3e-43 177.6 153 56.9
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 1.1e-42 177.2 166 53.0
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 2.4e-42 176.0 160 56.9
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 4.1e-42 175.3 206 45.1
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 5.4e-42 174.9 168 52.4
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 2.7e-41 172.6 168 53.0
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 7.8e-41 171.0 160 55.0
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 9.5e-39 164.1 134 58.2
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 2.1e-38 162.9 146 56.2
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 2.1e-38 162.9 107 71.0
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 8.1e-38 161.0 138 56.5
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 3.1e-37 159.1 115 63.5
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 6.8e-37 157.9 139 53.2
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 1.1e-34 150.6 141 53.2
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 1.9e-34 149.8 155 53.5
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 7.1e-34 147.9 136 53.7
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 1.0e-32 144.1 122 56.6
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 1.7e-32 143.3 142 51.4
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 2.3e-32 142.9 133 53.4
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 2.3e-32 142.9 137 51.8
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 6.6e-32 141.4 135 52.6
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 4.3e-31 138.7 141 48.9
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 4.3e-31 138.7 141 48.9
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.8e-30 136.0 126 52.4
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 8.1e-30 134.4 135 52.6
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 2.3e-29 132.9 119 54.6
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 9.9e-28 127.5 142 47.2
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 9.9e-28 127.5 142 47.2
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 1.3e-27 127.1 96 63.5
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 2.9e-27 125.9 93 63.4
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 4.9e-27 125.2 93 62.4
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 6.4e-27 124.8 124 50.0
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 1.4e-26 123.6 144 45.1
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 2.4e-26 122.9 148 43.2
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 1.3e-24 117.1 89 60.7
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 3.0e-24 115.9 78 69.2
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 6.6e-24 114.8 159 45.3
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 8.6e-24 114.4 153 37.3
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 8.9e-21 104.4 64 71.9
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 3.4e-20 102.4 137 40.9
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 8.7e-16 87.8 114 45.6
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 1.1e-13 80.9 79 51.9
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.8e-12 75.1 86 47.7
CBR_g19503 Chara braunii HOM05D004024 ORTHO05D004639 2.7e-09 66.2 156 32.7
TPR.G21432 Trifolium pratense HOM05D004936 ORTHO05D005977 3.3e-07 59.3 86 38.4
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 4.3e-07 58.9 118 33.9
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 4.3e-07 58.9 115 32.2
Dinv09658 Davidia involucrata HOM05D004936 ORTHO05D005977 5.6e-07 58.5 71 43.7
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 2.1e-06 56.6 107 35.5
THA.LOC104811646 Tarenaya hassleriana HOM05D004024 ORTHO05D004639 3.7e-06 55.8 70 41.4
Zm00001eb401140 Zea mays HOM05D004024 ORTHO05D004639 6.2e-06 55.1 109 32.1
Os03g0194500 Oryza sativa ssp. japonica HOM05D004024 ORTHO05D004639 8.1e-06 54.7 67 41.8


User provided reference genes

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