Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 0.0e+00 1928.7 1018 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 1.4e-145 521.5 948 35.4
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 3.6e-141 506.9 984 34.0
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 3.2e-134 483.8 936 33.2
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 1.1e-129 468.8 967 33.1
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 3.0e-119 434.1 953 31.0
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.8e-116 424.9 990 31.1
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 4.0e-116 423.7 929 30.7
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 1.2e-115 422.2 1015 31.3
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 1.5e-115 421.8 935 30.8
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 4.4e-115 420.2 930 31.0
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 7.5e-115 419.5 927 30.3
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 7.5e-115 419.5 897 31.3
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.3e-114 418.7 925 31.2
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 1.3e-114 418.7 923 31.3
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.9e-114 417.5 976 31.1
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 4.9e-114 416.8 812 32.0
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 1.1e-113 415.6 944 31.9
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 1.9e-113 414.8 954 31.1
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.4e-113 414.5 967 30.8
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 7.0e-113 412.9 978 30.6
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.2e-112 412.1 888 31.3
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 1.2e-112 412.1 992 29.7
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 1.6e-112 411.8 956 30.3
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 3.5e-112 410.6 1000 33.9
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 4.6e-112 410.2 945 31.5
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 4.6e-112 410.2 935 31.0
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 6.0e-112 409.8 947 30.3
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 6.0e-112 409.8 1047 29.2
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 3.0e-111 407.5 956 30.5
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 5.0e-111 406.8 998 29.9
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 8.6e-111 406.0 1000 31.1
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 1.1e-110 405.6 956 30.0
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 1.5e-110 405.2 929 31.1
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 1.5e-110 405.2 948 31.1
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 1.5e-110 405.2 989 33.2
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 1.6e-109 401.7 944 29.8
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 2.8e-109 401.0 1057 29.7
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 6.2e-109 399.8 993 30.8
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.1e-108 399.1 980 30.2
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 1.8e-108 398.3 971 32.1
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 3.1e-108 397.5 981 30.5
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 4.0e-108 397.1 1026 29.3
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 8.9e-108 396.0 956 31.0
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 1.2e-107 395.6 966 28.8
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 3.4e-107 394.0 1068 28.2
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 3.4e-107 394.0 1018 31.1
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 4.4e-107 393.7 986 28.7
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 7.5e-107 392.9 953 30.1
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 1.3e-106 392.1 955 29.9
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 1.7e-106 391.7 955 30.2
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 3.7e-106 390.6 961 29.3
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 1.1e-105 389.0 940 30.3
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 1.4e-105 388.7 984 29.6
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.4e-105 388.7 940 34.1
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 1.4e-105 388.7 1004 30.3
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.9e-105 388.3 1030 29.8
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 3.2e-105 387.5 1105 29.7
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 1.2e-104 385.6 972 29.7
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 1.6e-104 385.2 999 29.7
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 2.1e-104 384.8 887 30.6
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 2.7e-104 384.4 1067 29.1
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 2.7e-104 384.4 960 30.4
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 2.7e-104 384.4 979 29.1
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 4.6e-104 383.6 1067 29.0
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 4.6e-104 383.6 1067 29.0
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 6.0e-104 383.3 955 29.7
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.8e-104 382.9 955 29.7
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.3e-103 382.1 1066 28.9
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 1.3e-103 382.1 1089 28.8
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 3.0e-103 380.9 1060 28.9
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.5e-102 378.6 950 29.8
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 1.9e-102 378.3 968 29.4
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 1.9e-102 378.3 947 30.0
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 3.3e-102 377.5 990 29.7
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 5.6e-102 376.7 989 29.8
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 7.3e-102 376.3 1250 27.0
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 1.2e-101 375.6 939 30.4
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 2.1e-101 374.8 993 28.7
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 3.6e-101 374.0 1032 31.1
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 6.8e-100 369.8 1080 28.1
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 1.5e-99 368.6 961 29.1
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 2.6e-99 367.9 1042 28.6
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 9.9e-99 365.9 999 28.5
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 1.7e-98 365.2 961 29.1
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.9e-98 364.4 887 30.1
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 2.4e-97 361.3 999 28.0
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.8e-92 345.1 928 27.7
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 1.5e-91 342.0 1009 27.9
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 3.4e-91 340.9 890 29.0
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.3e-90 339.0 961 28.5
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 9.3e-89 332.8 951 27.0
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 3.0e-87 327.8 1024 26.7
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 6.2e-85 320.1 970 27.6
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.0e-83 315.1 1009 26.6
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.7e-82 312.0 825 29.0
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 9.3e-81 306.2 787 28.7
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 3.9e-79 300.8 554 32.7
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 5.1e-79 300.4 971 26.7
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.9e-78 298.5 935 28.9
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 3.3e-78 297.7 949 25.2
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 3.4e-75 287.7 938 30.4
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.9e-74 284.6 140 100.0
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.1e-73 282.7 895 27.4
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 9.3e-73 279.6 852 28.1
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 1.9e-70 271.9 530 31.7
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 4.8e-69 267.3 785 26.2
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 2.0e-67 261.9 517 31.1
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 5.8e-67 260.4 885 26.0
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 2.1e-64 251.9 1216 24.2
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.9e-62 245.4 526 30.4
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-39 167.5 262 34.4
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.3e-34 152.9 256 33.2
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 5.5e-33 147.5 618 23.1
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.4e-30 137.9 316 31.0
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 8.5e-26 123.6 244 29.5
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 4.4e-22 111.3 175 35.4
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 9.8e-22 110.2 137 40.1
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.4e-20 105.5 128 40.6
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 1.5e-17 96.3 138 37.0
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 2.0e-14 85.9 106 39.6
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.9e-13 81.3 98 37.8
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.8e-12 79.3 84 44.0
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 2.5e-09 68.9 87 39.1
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.1e-08 65.9 106 33.0
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.5e-06 59.7 115 27.0
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 2.6e-06 58.9 40 67.5
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 4.4e-06 58.2 58 44.8


User provided reference genes

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