Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.9e-122 442.6 231 100.0
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.9e-98 362.8 236 85.6
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 6.4e-46 188.3 241 45.6
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 1.9e-45 186.8 240 46.7
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 5.4e-45 185.3 242 45.0
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 9.2e-45 184.5 247 45.3
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 1.2e-44 184.1 242 46.7
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 1.6e-44 183.7 238 44.5
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 2.1e-44 183.3 241 45.6
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 6.0e-44 181.8 240 47.1
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 6.0e-44 181.8 238 45.8
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 1.0e-43 181.0 244 45.9
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 1.3e-43 180.6 241 46.1
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 1.3e-43 180.6 245 45.3
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 1.3e-43 180.6 241 45.2
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 2.3e-43 179.9 241 45.2
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 3.0e-43 179.5 238 46.2
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 5.1e-43 178.7 244 44.3
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 5.1e-43 178.7 239 46.4
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 8.7e-43 177.9 245 45.7
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 1.1e-42 177.6 243 43.2
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 1.1e-42 177.6 247 44.5
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.1e-42 177.6 241 44.8
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 1.5e-42 177.2 243 44.4
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 1.5e-42 177.2 240 45.8
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 1.5e-42 177.2 243 44.9
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 1.5e-42 177.2 241 44.4
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 1.5e-42 177.2 240 45.8
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.5e-42 177.2 237 46.4
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 1.5e-42 177.2 241 45.6
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 1.9e-42 176.8 243 44.4
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 1.9e-42 176.8 242 45.0
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 1.9e-42 176.8 236 43.6
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 2.5e-42 176.4 241 44.0
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 2.5e-42 176.4 240 43.8
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 2.5e-42 176.4 243 44.9
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.5e-42 176.4 245 43.3
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 2.5e-42 176.4 241 46.1
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.3e-42 176.0 240 45.4
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.3e-42 176.0 233 45.1
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.3e-42 176.0 233 45.1
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 5.6e-42 175.3 242 43.0
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 5.6e-42 175.3 240 45.0
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 7.3e-42 174.9 244 43.9
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 7.3e-42 174.9 250 44.8
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 7.3e-42 174.9 250 44.8
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 7.3e-42 174.9 243 44.0
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 9.6e-42 174.5 243 44.4
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 9.6e-42 174.5 236 46.6
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 9.6e-42 174.5 250 44.4
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 9.6e-42 174.5 241 44.8
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 9.6e-42 174.5 242 44.2
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 1.2e-41 174.1 240 44.6
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 1.2e-41 174.1 239 45.2
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.2e-41 174.1 241 45.6
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 1.6e-41 173.7 240 44.6
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.1e-41 173.3 240 45.0
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.8e-41 172.9 243 44.9
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 2.8e-41 172.9 237 45.1
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 2.8e-41 172.9 240 45.0
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 3.6e-41 172.6 242 43.8
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 3.6e-41 172.6 241 41.1
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 3.6e-41 172.6 245 42.4
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 4.7e-41 172.2 240 44.6
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 4.7e-41 172.2 241 45.6
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 6.2e-41 171.8 236 45.3
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 6.2e-41 171.8 277 39.4
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 6.2e-41 171.8 235 44.7
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 8.1e-41 171.4 243 45.3
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 1.1e-40 171.0 248 44.0
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.4e-40 170.6 242 45.5
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 1.4e-40 170.6 240 44.6
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.4e-40 170.6 240 44.6
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.4e-40 170.6 239 43.5
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.8e-40 170.2 242 44.2
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 2.4e-40 169.9 244 43.0
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 2.4e-40 169.9 242 43.0
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 3.1e-40 169.5 242 42.1
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 3.1e-40 169.5 240 44.6
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 4.0e-40 169.1 240 42.1
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 6.9e-40 168.3 248 45.2
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 9.0e-40 167.9 241 44.4
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 9.0e-40 167.9 235 42.6
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 9.0e-40 167.9 246 41.9
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 1.2e-39 167.5 272 41.2
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 1.2e-39 167.5 239 44.8
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 2.0e-39 166.8 238 42.0
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 2.0e-39 166.8 236 43.6
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 3.4e-39 166.0 241 43.2
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 3.4e-39 166.0 242 43.8
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 4.4e-39 165.6 247 42.5
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 4.4e-39 165.6 240 43.3
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 4.4e-39 165.6 269 38.3
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 5.8e-39 165.2 240 43.8
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 7.6e-39 164.9 236 42.8
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 9.9e-39 164.5 247 40.9
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.3e-38 164.1 239 43.9
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 2.9e-38 162.9 242 44.2
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 4.9e-38 162.2 241 39.0
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 8.4e-38 161.4 239 42.3
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 1.1e-37 161.0 231 42.9
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 2.4e-37 159.8 251 41.8
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 3.2e-37 159.5 242 42.1
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 5.4e-37 158.7 225 44.9
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 1.2e-36 157.5 235 41.3
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 2.1e-36 156.8 242 39.7
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 2.7e-36 156.4 220 42.3
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 2.7e-36 156.4 272 39.0
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 4.6e-36 155.6 238 41.2
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 6.0e-36 155.2 250 41.2
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 7.8e-36 154.8 242 39.3
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 7.8e-36 154.8 242 39.3
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 1.7e-35 153.7 254 37.4
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 8.7e-35 151.4 239 40.2
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 8.7e-35 151.4 304 35.9
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 4.3e-34 149.1 195 48.2
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 1.3e-33 147.5 222 41.9
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 8.1e-33 144.8 205 44.9
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 8.1e-33 144.8 238 40.8
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.4e-32 143.3 209 45.0
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 3.1e-32 142.9 265 37.0
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 3.1e-32 142.9 245 36.3
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 6.9e-32 141.7 214 42.1
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 4.5e-31 139.0 215 41.4
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 4.5e-31 139.0 286 37.1
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 5.8e-31 138.7 236 39.8
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 7.6e-31 138.3 239 38.5
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 1.7e-30 137.1 246 38.6
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 3.8e-30 136.0 245 38.8
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 3.8e-30 136.0 236 36.9
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 4.9e-30 135.6 244 38.1
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 4.2e-29 132.5 240 40.0
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 5.4e-29 132.1 223 35.9
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 7.1e-29 131.7 213 39.4
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 2.1e-28 130.2 181 44.8
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 3.5e-28 129.4 179 45.8
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 1.0e-27 127.9 196 43.4
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 1.8e-27 127.1 200 41.5
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 5.1e-27 125.6 107 57.9
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 8.7e-27 124.8 207 37.7
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 1.9e-26 123.6 189 42.9
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 2.5e-26 123.2 196 42.3
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 2.5e-26 123.2 264 34.1
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 4.3e-26 122.5 193 40.4
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 7.4e-26 121.7 329 31.0
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 1.6e-25 120.6 205 42.4
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 2.1e-25 120.2 241 35.3
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.8e-25 119.8 246 36.2
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.8e-25 119.8 246 36.2
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 4.8e-25 119.0 176 42.6
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 6.2e-25 118.6 179 44.7
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.8e-24 117.1 231 36.8
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 6.9e-24 115.2 265 34.3
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 6.9e-24 115.2 184 40.8
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 6.9e-24 115.2 231 36.4
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 5.8e-23 112.1 117 53.8
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 5.8e-23 112.1 231 35.9
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 7.6e-23 111.7 154 44.8
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.2e-22 110.2 192 39.1
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.1e-21 107.8 181 41.4
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.9e-21 107.1 183 37.7
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.5e-21 106.7 250 34.0
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 7.1e-21 105.1 247 33.2
MBI16_g09339_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 1.6e-20 104.0 94 55.3
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 1.6e-17 94.0 163 36.2
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 1.8e-16 90.5 89 53.9
Oeu048106.1 Olea europaea HOM05D003593 ORTHO05D004064 2.4e-16 90.1 82 53.7
MBI16_g41745_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 5.3e-16 89.0 83 53.0
Mapoly0058s0071 Marchantia polymorpha HOM05D003593 ORTHO05D004064 7.6e-15 85.1 362 25.4
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 1.4e-13 80.9 77 50.6
C04p36780 Brassica napus HOM05D003593 ORTHO05D004064 4.2e-13 79.3 84 47.6
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 1.2e-12 77.8 144 40.3
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 6.7e-11 72.0 71 50.7
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.1e-10 71.2 75 52.0
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.5e-10 70.9 71 53.5
Os08g0534350 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.9e-10 70.5 71 53.5
Os08g0535000 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.9e-10 70.5 71 53.5
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 3.3e-10 69.7 71 52.1
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 4.3e-10 69.3 66 53.0
MD16G1244000 Malus domestica HOM05D003593 ORTHO05D004064 5.7e-10 68.9 71 52.1
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 1.1e-08 64.7 48 62.5
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 1.2e-07 61.2 71 52.1
MCO03G348 Micromonas commoda HOM05D003593 ORTHO05D004064 3.4e-07 59.7 106 30.2
Haze_22054 Corylus avellana HOM05D003593 ORTHO05D004064 8.5e-06 55.1 60 45.0


User provided reference genes

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