Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO352G0071 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 3.7e-60 234.6 111 100.0
SMO116G0459 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.1e-46 189.9 110 84.5
SMO201G0239 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 9.0e-30 133.7 95 71.6
SMO114G0004 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.2e-29 133.3 89 74.2
Gohir.A11G115900 Gossypium hirsutum HOM05D004536 ORTHO05D005628 7.9e-26 120.6 109 55.0
Gohir.D11G120800 Gossypium hirsutum HOM05D004536 ORTHO05D005628 7.9e-26 120.6 109 55.0
Gorai.007G129700 Gossypium raimondii HOM05D004536 ORTHO05D005628 1.8e-25 119.4 109 55.0
Ciclev10024323m.g Citrus clementina HOM05D004536 ORTHO05D005628 2.3e-25 119.0 109 52.3
Ah.15g093870 Amaranthus hybridus HOM05D000154 ORTHO05D000092 3.0e-25 118.6 110 51.8
Glyma.03G211900 Glycine max HOM05D004536 ORTHO05D005628 3.0e-25 118.6 110 53.6
SMO201G0100 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 3.0e-25 118.6 76 77.6
Haze_04870 Corylus avellana HOM05D004536 ORTHO05D005628 3.9e-25 118.2 109 53.2
Cfa005976 Carpinus fangiana HOM05D004536 ORTHO05D005628 5.1e-25 117.9 109 53.2
Nitab4.5_0009457g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 6.7e-25 117.5 110 52.7
Phvul.001G204900 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 6.7e-25 117.5 110 52.7
MSTRG.12600 Avicennia marina HOM05D004536 ORTHO05D005628 1.1e-24 116.7 110 51.8
PGSC0003DMG400011389 Solanum tuberosum HOM05D004536 ORTHO05D005628 1.1e-24 116.7 110 51.8
Potri.014G132400 Populus trichocarpa HOM05D004536 ORTHO05D005628 1.5e-24 116.3 102 55.9
GSVIVG01010948001 Vitis vinifera HOM05D004536 ORTHO05D005628 1.5e-24 116.3 109 52.3
Thecc.01G294900 Theobroma cacao HOM05D004536 ORTHO05D005628 1.9e-24 115.9 108 52.8
CAN.G339.41 Capsicum annuum HOM05D004536 ORTHO05D005628 2.5e-24 115.5 110 50.9
Migut.N01407 Erythranthe guttata HOM05D004536 ORTHO05D005628 2.5e-24 115.5 110 50.9
Sopen09g029670 Solanum pennellii HOM05D004536 ORTHO05D005628 3.3e-24 115.2 110 50.9
Nitab4.5_0001697g0010 Nicotiana tabacum HOM05D004536 ORTHO05D005628 4.3e-24 114.8 110 51.8
Peaxi162Scf00067g00235 Petunia axillaris HOM05D004536 ORTHO05D005628 4.3e-24 114.8 110 50.9
PGR090G0002 Punica granatum HOM05D004536 ORTHO05D005628 4.3e-24 114.8 115 50.4
PGR119G2278 Punica granatum HOM05D004536 ORTHO05D005628 4.3e-24 114.8 115 50.4
Solyc09g074830.3 Solanum lycopersicum HOM05D004536 ORTHO05D005628 4.3e-24 114.8 110 50.9
ClCG09G006150 Citrullus lanatus HOM05D004536 ORTHO05D005628 5.6e-24 114.4 110 51.8
Sabra02G0151200 Salix brachista HOM05D004536 ORTHO05D005628 5.6e-24 114.4 110 50.9
Migut.I00234 Erythranthe guttata HOM05D004536 ORTHO05D005628 7.4e-24 114.0 109 50.5
Dinv33024 Davidia involucrata HOM05D004536 ORTHO05D005628 9.6e-24 113.6 110 50.9
VMungo1383G2476 Vigna mungo HOM05D004536 ORTHO05D005628 9.6e-24 113.6 110 51.8
ATR0598G141 Amborella trichopoda HOM05D004536 ORTHO05D005628 1.3e-23 113.2 91 59.3
Sed0010277 Sechium edule HOM05D004536 ORTHO05D005628 1.3e-23 113.2 110 53.6
arahy.Tifrunner.gnm1.ann1.RD3VC2 Arachis hypogaea HOM05D004536 ORTHO05D005628 1.6e-23 112.8 110 51.8
CiPaw.07G104100 Carya illinoinensis HOM05D004536 ORTHO05D005628 1.6e-23 112.8 107 54.2
Lalb_Chr18g0047231 Lupinus albus HOM05D004536 ORTHO05D005628 1.6e-23 112.8 110 50.9
Manes.05G065100 Manihot esculenta HOM05D004536 ORTHO05D005628 1.6e-23 112.8 110 50.0
Atru.chr5.1224 Acer truncatum HOM05D004536 ORTHO05D005628 2.1e-23 112.5 109 49.5
MELO3C016039.2 Cucumis melo HOM05D004536 ORTHO05D005628 2.8e-23 112.1 110 50.9
Potri.002G208251 Populus trichocarpa HOM05D004536 ORTHO05D005628 2.8e-23 112.1 110 50.0
Sc17g0003350 Simmondsia chinensis HOM05D004536 ORTHO05D005628 2.8e-23 112.1 109 48.6
Lj1g0006956 Lotus japonicus HOM05D004536 ORTHO05D005628 3.7e-23 111.7 110 50.0
Manes.01G215900 Manihot esculenta HOM05D004536 ORTHO05D005628 3.7e-23 111.7 109 47.7
Cpa.g.sc9.197 Carica papaya HOM05D004536 ORTHO05D005628 4.8e-23 111.3 102 54.9
CsaV3_7G029010 Cucumis sativus L. HOM05D004536 ORTHO05D005628 4.8e-23 111.3 110 50.9
A09p68450 Brassica napus HOM05D004536 ORTHO05D005628 6.2e-23 110.9 95 55.8
BraA09t42188Z Brassica rapa HOM05D004536 ORTHO05D005628 6.2e-23 110.9 95 55.8
AUR62033185 Chenopodium quinoa HOM05D004536 ORTHO05D005628 6.2e-23 110.9 105 51.4
Thhalv10007445m.g Eutrema salsugineum HOM05D004536 ORTHO05D005628 6.2e-23 110.9 95 56.8
SalBow2G0652 Salvia bowleyana HOM05D004536 ORTHO05D005628 6.2e-23 110.9 110 50.0
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 8.2e-23 110.5 109 50.5
arahy.Tifrunner.gnm1.ann1.BFHA12 Arachis hypogaea HOM05D004536 ORTHO05D005628 8.2e-23 110.5 110 50.9
CARHR002300 Cardamine hirsuta HOM05D004536 ORTHO05D005628 8.2e-23 110.5 95 56.8
QL12p030151 Quercus lobata HOM05D004536 ORTHO05D005628 8.2e-23 110.5 109 51.4
RcHm_v2.0_Chr6g0293261 Rosa chinensis HOM05D004536 ORTHO05D005628 8.2e-23 110.5 110 50.0
Sp1g01960 Schrenkiella parvula HOM05D004536 ORTHO05D005628 8.2e-23 110.5 95 55.8
AUR62008593 Chenopodium quinoa HOM05D004536 ORTHO05D005628 1.1e-22 110.2 105 51.4
BcaC07g42280 Brassica carinata HOM05D004536 ORTHO05D005628 1.4e-22 109.8 95 55.8
BcaC07g42414 Brassica carinata HOM05D004536 ORTHO05D005628 1.4e-22 109.8 95 55.8
C08p53070 Brassica napus HOM05D004536 ORTHO05D005628 1.4e-22 109.8 95 55.8
THA.LOC104801260 Tarenaya hassleriana HOM05D004536 ORTHO05D005628 1.4e-22 109.8 95 54.7
ECA236G2131 Erigeron canadensis HOM05D004536 ORTHO05D005628 1.8e-22 109.4 109 50.5
Prupe.8G256300 Prunus persica HOM05D004536 ORTHO05D005628 1.8e-22 109.4 110 50.0
TPR.G9637 Trifolium pratense HOM05D004536 ORTHO05D005628 1.8e-22 109.4 110 50.0
Carub.0001s0210 Capsella rubella HOM05D004536 ORTHO05D005628 2.4e-22 109.0 95 55.8
Migut.I00246 Erythranthe guttata HOM05D004536 ORTHO05D005628 2.4e-22 109.0 109 50.5
Nn4g25926 Nelumbo nucifera HOM05D004536 ORTHO05D005628 2.4e-22 109.0 110 48.2
Oeu024513.3 Olea europaea HOM05D004536 ORTHO05D005628 2.4e-22 109.0 109 51.4
DCAR_012399 Daucus carota HOM05D004536 ORTHO05D005628 3.1e-22 108.6 109 48.6
Eucgr.H01178 Eucalyptus grandis HOM05D004536 ORTHO05D005628 3.1e-22 108.6 94 56.4
Eucgr.H01182 Eucalyptus grandis HOM05D004536 ORTHO05D005628 3.1e-22 108.6 94 56.4
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 4.0e-22 108.2 95 54.7
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 4.0e-22 108.2 95 54.7
Ca_09139_v3 Cicer arietinum L. HOM05D004536 ORTHO05D005628 4.0e-22 108.2 91 58.2
PSO832G3458 Papaver somniferum HOM05D004536 ORTHO05D005628 4.0e-22 108.2 109 49.5
TAR636G0132 Trochodendron aralioides HOM05D000319 ORTHO05D000903 4.0e-22 108.2 109 48.6
HanXRQChr06g0163971 Helianthus annuus HOM05D004536 ORTHO05D005628 5.3e-22 107.8 109 49.5
AL1G12410 Arabidopsis lyrata HOM05D004536 ORTHO05D005628 9.0e-22 107.1 91 57.1
EL10Ac7g17495 Beta vulgaris HOM05D004536 ORTHO05D005628 9.0e-22 107.1 108 48.1
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 1.2e-21 106.7 95 53.7
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 1.2e-21 106.7 95 53.7
CSS0025822 Camellia sinensis var. sinensis HOM05D004536 ORTHO05D005628 1.2e-21 106.7 110 48.2
CANSAT25G0197 Cannabis sativa HOM05D004536 ORTHO05D005628 1.2e-21 106.7 109 50.5
CANSAT25G0282 Cannabis sativa HOM05D004536 ORTHO05D005628 1.2e-21 106.7 109 50.5
PSO210G1618 Papaver somniferum HOM05D004536 ORTHO05D005628 1.2e-21 106.7 109 49.5
Rhsim01G0282800 Rhododendron simsii HOM05D004536 ORTHO05D005628 1.2e-21 106.7 109 48.6
AT1G02970 Arabidopsis thaliana HOM05D004536 ORTHO05D005628 1.5e-21 106.3 91 56.0
DCAR_018342 Daucus carota HOM05D004536 ORTHO05D005628 1.5e-21 106.3 108 49.1
Glyma.13G025500 Glycine max HOM05D004536 ORTHO05D005628 1.5e-21 106.3 91 56.0
Aa31LG1G9600 Aethionema arabicum HOM05D004536 ORTHO05D005628 2.0e-21 105.9 91 56.0
Medtr7g108500 Medicago truncatula HOM05D004536 ORTHO05D005628 2.0e-21 105.9 91 58.2
BcaB01g06383 Brassica carinata HOM05D004536 ORTHO05D005628 3.4e-21 105.1 95 53.7
FAN24G0904 Fragaria x ananassa HOM05D004536 ORTHO05D005628 3.4e-21 105.1 110 48.2
MBI16_g23764_MAGBIO Magnolia biondii HOM05D004536 ORTHO05D005628 4.5e-21 104.8 110 47.3
Os02g0135300 Oryza sativa ssp. japonica HOM05D004536 ORTHO05D005628 4.5e-21 104.8 87 58.6
Actinidia24840 Actinidia chinensis HOM05D004536 ORTHO05D005628 5.8e-21 104.4 91 56.0
CBR_g44348 Chara braunii HOM05D004536 ORTHO05D005628 5.8e-21 104.4 91 57.1
FvH4_c6g00040 Fragaria vesca HOM05D004536 ORTHO05D005628 5.8e-21 104.4 110 48.2
FAN15G2314 Fragaria x ananassa HOM05D004536 ORTHO05D005628 5.8e-21 104.4 110 47.3
MD11G1303200 Malus domestica HOM05D004536 ORTHO05D005628 7.6e-21 104.0 110 47.3
MD03G1283400 Malus domestica HOM05D004536 ORTHO05D005628 1.0e-20 103.6 110 47.3
Mapoly0002s0169 Marchantia polymorpha HOM05D004536 ORTHO05D005628 1.0e-20 103.6 93 50.5
CDE10G0909 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 1.3e-20 103.2 117 46.2
Hund18118 Selenicereus undatus HOM05D004536 ORTHO05D005628 1.3e-20 103.2 110 45.5
Lsat_1_v5_gn_8_54521 Lactuca sativa HOM05D004536 ORTHO05D005628 1.7e-20 102.8 91 54.9
Pp3c16_16660 Physcomitrium patens HOM05D004536 ORTHO05D005628 2.9e-20 102.1 91 50.5
Psat3g023800 Pisum sativum HOM05D004536 ORTHO05D005628 2.9e-20 102.1 91 54.9
vmacro14989 Vaccinium macrocarpon HOM05D004536 ORTHO05D005628 3.8e-20 101.7 107 48.6
Zm00001eb209170 Zea mays HOM05D004536 ORTHO05D005628 4.9e-20 101.3 87 56.3
Cc01_g20560 Coffea canephora HOM05D004536 ORTHO05D005628 6.5e-20 100.9 109 46.8
AagrBONN_evm.TU.Sc2ySwM_362.1715 Anthoceros agrestis HOM05D004536 ORTHO05D005628 1.1e-19 100.1 93 52.7
Phvul.001G172200 Phaseolus vulgaris HOM05D004536 ORTHO05D005628 1.1e-19 100.1 110 43.6
BcaB03g13494 Brassica carinata HOM05D004536 ORTHO05D005628 1.9e-19 99.4 85 56.5
SEGI_27037 Sequoiadendron giganteum HOM05D004536 ORTHO05D005628 3.2e-19 98.6 91 53.8
VMungo0540G1844 Vigna mungo HOM05D004536 ORTHO05D005628 5.5e-19 97.8 103 44.7
Eucgr.H01185 Eucalyptus grandis HOM05D004536 ORTHO05D005628 1.2e-18 96.7 90 52.2
Migut.M00484 Erythranthe guttata HOM05D004536 ORTHO05D005628 1.8e-17 92.8 122 41.8
SHI15387 Sapria himalayana HOM05D004536 ORTHO05D005628 3.0e-17 92.0 122 43.4
Carub.0033s0002 Capsella rubella HOM05D004536 ORTHO05D005628 8.7e-17 90.5 84 53.6
Migut.I00238 Erythranthe guttata HOM05D004536 ORTHO05D005628 1.1e-16 90.1 109 44.0
FAN20G2283 Fragaria x ananassa HOM05D004536 ORTHO05D005628 1.3e-15 86.7 100 44.0
Migut.K00643 Erythranthe guttata HOM05D004536 ORTHO05D005628 6.3e-15 84.3 104 44.2
PRCOL_00003559 Prasinoderma coloniale HOM05D004536 ORTHO05D005628 3.1e-14 82.0 87 48.3
Lj2A1189G43 Lonicera japonica HOM05D004536 ORTHO05D005628 7.6e-13 77.4 114 40.4
SMO308G0073 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.0e-12 77.0 38 89.5
SGA_v2.0_scaffold36G14354 Striga asiatica HOM05D004536 ORTHO05D005628 1.4e-11 73.2 68 54.4
SMO014G0012 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.9e-11 72.8 45 77.8
AagrBONN_evm.TU.Sc2ySwM_117.2160 Anthoceros agrestis HOM05D004536 ORTHO05D021246 1.6e-10 69.7 86 41.9
Pp3c7_5070 Physcomitrium patens HOM05D004536 ORTHO05D021246 2.7e-10 68.9 86 40.7
Mapoly0070s0074 Marchantia polymorpha HOM05D004536 ORTHO05D021246 1.0e-09 67.0 112 34.8
SMO268G0035 Selaginella moellendorffii HOM05D004536 ORTHO05D005628 1.0e-09 67.0 42 76.2
SMO351G0646 Selaginella moellendorffii HOM05D042271 ORTHO05D376050 1.4e-09 66.6 35 88.6
COL.COLO4_23401 Corchorus olitorius HOM05D004536 ORTHO05D005628 1.1e-08 63.5 61 50.8
PRCOL_00001413 Prasinoderma coloniale HOM05D004536 ORTHO05D021246 3.3e-08 62.0 83 38.6
Cre07.g355250 Chlamydomonas reinhardtii HOM05D004536 ORTHO05D005628 1.3e-07 60.1 97 36.1
GSVIVG01010952001 Vitis vinifera HOM05D004536 ORTHO05D005628 3.7e-07 58.5 73 43.8
PRCOL_00002403 Prasinoderma coloniale HOM05D000738 ORTHO05D023563 6.9e-06 54.3 84 32.1
SMO335G0005 Selaginella moellendorffii HOM05D000738 ORTHO05D004600 6.9e-06 54.3 98 34.7
SMO335G0022 Selaginella moellendorffii HOM05D000738 ORTHO05D004600 6.9e-06 54.3 98 34.7


User provided reference genes

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