Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO352G0027 Selaginella moellendorffii HOM05D004009 ORTHO05D004617 1.9e-44 182.2 94 100.0
Mapoly0031s0031 Marchantia polymorpha HOM05D004009 ORTHO05D004617 2.2e-16 89.0 94 54.3
THA.LOC104818726 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 1.3e-13 79.7 96 47.9
TWI56G0677 Tripterygium wilfordii HOM05D004009 ORTHO05D004617 1.7e-13 79.3 96 47.9
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 2.2e-13 79.0 94 47.9
SEGI_15227 Sequoiadendron giganteum HOM05D004009 ORTHO05D004617 2.9e-13 78.6 96 45.8
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 2.9e-13 78.6 94 46.8
Aqoxy2G02931 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 3.8e-13 78.2 94 47.9
Aqoxy5G00760 Aquilegia oxysepala HOM05D004009 ORTHO05D004617 3.8e-13 78.2 96 46.9
Potri.007G100900 Populus trichocarpa HOM05D004009 ORTHO05D004617 3.8e-13 78.2 95 48.4
DCAR_029387 Daucus carota HOM05D004009 ORTHO05D004617 5.0e-13 77.8 94 45.7
Lj3g0001996 Lotus japonicus HOM05D004009 ORTHO05D004617 5.0e-13 77.8 94 46.8
HPP92_021911 Vanilla planifolia HOM05D004009 ORTHO05D004617 5.0e-13 77.8 94 47.9
Actinidia26756 Actinidia chinensis HOM05D004009 ORTHO05D004617 6.5e-13 77.4 96 46.9
Os01g0256600 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 6.5e-13 77.4 94 45.7
Zm00001eb088470 Zea mays HOM05D004009 ORTHO05D004617 6.5e-13 77.4 94 46.8
Atru.chr2.80 Acer truncatum HOM05D004009 ORTHO05D004617 8.5e-13 77.0 96 45.8
CsaV3_4G029790 Cucumis sativus L. HOM05D004009 ORTHO05D004617 8.5e-13 77.0 96 44.8
Duzib106G1589 Durio zibethinus HOM05D004009 ORTHO05D004617 8.5e-13 77.0 96 46.9
Pp3c1_22820 Physcomitrium patens HOM05D004009 ORTHO05D004617 8.5e-13 77.0 96 46.9
Actinidia35549 Actinidia chinensis HOM05D004009 ORTHO05D004617 1.1e-12 76.6 96 45.8
CDE01G0501 Ceratophyllum demersum HOM05D004009 ORTHO05D004617 1.1e-12 76.6 94 45.7
Psat6g233080 Pisum sativum HOM05D004009 ORTHO05D004617 1.1e-12 76.6 94 46.8
ClCG04G003110 Citrullus lanatus HOM05D004009 ORTHO05D004617 1.4e-12 76.3 96 44.8
MELO3C024644.2 Cucumis melo HOM05D004009 ORTHO05D004617 1.4e-12 76.3 96 44.8
Glyma.14G006000 Glycine max HOM05D004009 ORTHO05D004617 1.4e-12 76.3 96 46.9
Medtr1g114200 Medicago truncatula HOM05D004009 ORTHO05D004617 1.4e-12 76.3 94 45.7
Ca_06468_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 1.9e-12 75.9 94 46.8
Ciclev10029577m.g Citrus clementina HOM05D004009 ORTHO05D004617 1.9e-12 75.9 96 44.8
Gohir.A08G208600 Gossypium hirsutum HOM05D004009 ORTHO05D004617 1.9e-12 75.9 96 46.9
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 1.9e-12 75.9 94 46.8
Manes.09G171300 Manihot esculenta HOM05D004009 ORTHO05D004617 1.9e-12 75.9 96 44.8
Phvul.008G286800 Phaseolus vulgaris HOM05D004009 ORTHO05D004617 1.9e-12 75.9 94 45.7
Thecc.05G314000 Theobroma cacao HOM05D004009 ORTHO05D004617 1.9e-12 75.9 96 45.8
Ca_11219_v3 Cicer arietinum L. HOM05D004009 ORTHO05D004617 2.5e-12 75.5 94 45.7
Eucgr.F00277 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.5e-12 75.5 96 45.8
Eucgr.F00508 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.5e-12 75.5 96 45.8
Glyma.02G307100 Glycine max HOM05D004009 ORTHO05D004617 2.5e-12 75.5 94 45.7
THA.LOC104821727 Tarenaya hassleriana HOM05D004009 ORTHO05D004617 2.5e-12 75.5 96 46.9
Cpa.g.sc327.8 Carica papaya HOM05D004009 ORTHO05D004617 3.2e-12 75.1 96 44.8
ClCG11G000240 Citrullus lanatus HOM05D004009 ORTHO05D004617 3.2e-12 75.1 96 44.8
Ah.06g189870 Amaranthus hybridus HOM05D004009 ORTHO05D004617 4.2e-12 74.7 94 44.7
CSS0030878 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 4.2e-12 74.7 96 43.8
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 4.2e-12 74.7 92 45.7
PSO478G4766 Papaver somniferum HOM05D004009 ORTHO05D004617 4.2e-12 74.7 96 44.8
Peaxi162Scf00131g00006 Petunia axillaris HOM05D004009 ORTHO05D004617 4.2e-12 74.7 100 44.0
Cfa006638 Carpinus fangiana HOM05D004009 ORTHO05D004617 5.5e-12 74.3 94 45.7
Duzib128G0284 Durio zibethinus HOM05D004009 ORTHO05D004617 5.5e-12 74.3 96 45.8
Hund07105 Selenicereus undatus HOM05D004009 ORTHO05D004617 5.5e-12 74.3 94 42.6
GSVIVG01031184001 Vitis vinifera HOM05D004009 ORTHO05D004617 5.5e-12 74.3 96 44.8
Zm00001eb053740 Zea mays HOM05D004009 ORTHO05D004617 5.5e-12 74.3 94 45.7
PGR004G0595 Punica granatum HOM05D004009 ORTHO05D004617 7.2e-12 73.9 96 42.7
COL.COLO4_00089 Corchorus olitorius HOM05D004009 ORTHO05D004617 9.4e-12 73.6 94 44.7
Gohir.D08G225500 Gossypium hirsutum HOM05D004009 ORTHO05D004617 9.4e-12 73.6 96 45.8
Gorai.004G239500 Gossypium raimondii HOM05D004009 ORTHO05D004617 9.4e-12 73.6 96 45.8
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 9.4e-12 73.6 94 42.6
Os03g0694800 Oryza sativa ssp. japonica HOM05D004009 ORTHO05D004617 9.4e-12 73.6 94 43.6
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 9.4e-12 73.6 96 43.8
Cc02_g34270 Coffea canephora HOM05D004009 ORTHO05D004617 1.2e-11 73.2 99 43.4
Haze_04129 Corylus avellana HOM05D004009 ORTHO05D004617 1.2e-11 73.2 94 44.7
Nitab4.5_0004323g0030 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.2e-11 73.2 100 41.0
QL02p014701 Quercus lobata HOM05D004009 ORTHO05D004617 1.2e-11 73.2 95 45.3
Sp2g20940 Schrenkiella parvula HOM05D004009 ORTHO05D004617 1.2e-11 73.2 96 43.8
EL10Ac4g09902 Beta vulgaris HOM05D004009 ORTHO05D004617 1.6e-11 72.8 94 43.6
BcaB07g34204 Brassica carinata HOM05D004009 ORTHO05D004617 1.6e-11 72.8 96 42.7
CANSAT80G2371 Cannabis sativa HOM05D004009 ORTHO05D004617 1.6e-11 72.8 94 44.7
AUR62000751 Chenopodium quinoa HOM05D004009 ORTHO05D004617 1.6e-11 72.8 94 43.6
AUR62005217 Chenopodium quinoa HOM05D004009 ORTHO05D004617 1.6e-11 72.8 94 43.6
Dinv40349 Davidia involucrata HOM05D004009 ORTHO05D004617 1.6e-11 72.8 95 46.3
Nitab4.5_0010629g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.6e-11 72.8 100 40.0
ATR0796G339 Amborella trichopoda HOM05D004009 ORTHO05D004617 2.1e-11 72.4 94 42.6
A02p38770 Brassica napus HOM05D004009 ORTHO05D004617 2.1e-11 72.4 96 42.7
Nn5g27800 Nelumbo nucifera HOM05D004009 ORTHO05D004617 2.1e-11 72.4 94 42.6
PSO782G5716 Papaver somniferum HOM05D004009 ORTHO05D004617 2.1e-11 72.4 96 43.8
BcaC03g17808 Brassica carinata HOM05D004009 ORTHO05D004617 2.7e-11 72.0 96 42.7
C02p58320 Brassica napus HOM05D004009 ORTHO05D004617 2.7e-11 72.0 96 42.7
CiPaw.08G161200 Carya illinoinensis HOM05D004009 ORTHO05D004617 2.7e-11 72.0 96 44.8
Eucgr.F00290 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.7e-11 72.0 96 44.8
Sc16g0008790 Simmondsia chinensis HOM05D004009 ORTHO05D004617 2.7e-11 72.0 96 43.8
VMungo0647G1943 Vigna mungo HOM05D004009 ORTHO05D004617 2.7e-11 72.0 96 44.8
AL6G39120 Arabidopsis lyrata HOM05D004009 ORTHO05D004617 3.6e-11 71.6 96 44.8
MSTRG.6369 Avicennia marina HOM05D004009 ORTHO05D004617 3.6e-11 71.6 99 44.4
BolC2t11896H Brassica oleracea HOM05D004009 ORTHO05D004617 3.6e-11 71.6 96 42.7
CAN.G177.17 Capsicum annuum HOM05D004009 ORTHO05D004617 3.6e-11 71.6 100 41.0
Ciclev10033184m.g Citrus clementina HOM05D004009 ORTHO05D004617 3.6e-11 71.6 96 43.8
Thhalv10005162m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 3.6e-11 71.6 96 43.8
FvH4_1g25940 Fragaria vesca HOM05D004009 ORTHO05D004617 3.6e-11 71.6 96 44.8
FAN19G2016 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.6e-11 71.6 96 44.8
FAN26G3151 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.6e-11 71.6 96 44.8
FAN28G1886 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.6e-11 71.6 96 44.8
RcHm_v2.0_Chr6g0270961 Rosa chinensis HOM05D004009 ORTHO05D004617 3.6e-11 71.6 96 44.8
Sp1g06410 Schrenkiella parvula HOM05D004009 ORTHO05D004617 3.6e-11 71.6 96 43.8
AagrBONN_evm.TU.Sc2ySwM_368.1872 Anthoceros agrestis HOM05D004009 ORTHO05D004617 4.6e-11 71.2 99 48.5
BcaNung04749 Brassica carinata HOM05D004009 ORTHO05D004617 4.6e-11 71.2 96 42.7
ECA236G1235 Erigeron canadensis HOM05D004009 ORTHO05D004617 4.6e-11 71.2 100 43.0
Solyc07g045390.3 Solanum lycopersicum HOM05D004009 ORTHO05D004617 4.6e-11 71.2 100 41.0
Sopen07g023940 Solanum pennellii HOM05D004009 ORTHO05D004617 4.6e-11 71.2 100 41.0
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 6.1e-11 70.9 94 44.7
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 6.1e-11 70.9 94 44.7
Thhalv10000673m.g Eutrema salsugineum HOM05D004009 ORTHO05D004617 6.1e-11 70.9 94 41.5
Lalb_Chr04g0247211 Lupinus albus HOM05D004009 ORTHO05D004617 6.1e-11 70.9 94 43.6
Peaxi162Scf00154g00518 Petunia axillaris HOM05D004009 ORTHO05D004617 6.1e-11 70.9 100 40.0
QL03p019968 Quercus lobata HOM05D004009 ORTHO05D004617 6.1e-11 70.9 93 41.9
PGSC0003DMG400017402 Solanum tuberosum HOM05D004009 ORTHO05D004617 6.1e-11 70.9 100 40.0
CiPaw.07G022500 Carya illinoinensis HOM05D004009 ORTHO05D004617 7.9e-11 70.5 96 43.8
Eucgr.F00288 Eucalyptus grandis HOM05D004009 ORTHO05D004617 7.9e-11 70.5 95 44.2
FAN10G0557 Fragaria x ananassa HOM05D004009 ORTHO05D004617 7.9e-11 70.5 94 43.6
MBI14_g17350_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 7.9e-11 70.5 94 42.6
SHI18095 Sapria himalayana HOM05D004009 ORTHO05D004617 7.9e-11 70.5 94 42.6
BraA02t08853Z Brassica rapa HOM05D004009 ORTHO05D004617 1.0e-10 70.1 96 41.7
unitig_744.g24181 Utricularia gibba HOM05D004009 ORTHO05D004617 1.0e-10 70.1 99 42.4
Carub.0006s2476 Capsella rubella HOM05D004009 ORTHO05D004617 1.4e-10 69.7 96 41.7
Nitab4.5_0004010g0040 Nicotiana tabacum HOM05D004009 ORTHO05D004617 1.4e-10 69.7 99 39.4
AT5G27820 Arabidopsis thaliana HOM05D004009 ORTHO05D004617 1.8e-10 69.3 96 42.7
A06p37330 Brassica napus HOM05D004009 ORTHO05D004617 2.3e-10 68.9 96 41.7
C07p41140 Brassica napus HOM05D004009 ORTHO05D004617 2.3e-10 68.9 96 41.7
BolC7t44642H Brassica oleracea HOM05D004009 ORTHO05D004617 2.3e-10 68.9 96 41.7
BraA06t26655Z Brassica rapa HOM05D004009 ORTHO05D004617 2.3e-10 68.9 96 41.7
AUR62039989 Chenopodium quinoa HOM05D004009 ORTHO05D004617 2.3e-10 68.9 94 41.5
MBI18_g06039_MAGBIO Magnolia biondii HOM05D004009 ORTHO05D004617 2.3e-10 68.9 87 43.7
Prupe.2G141100 Prunus persica HOM05D004009 ORTHO05D004617 2.3e-10 68.9 94 42.6
Aa31LG11G9540 Aethionema arabicum HOM05D004009 ORTHO05D004617 3.0e-10 68.6 96 42.7
MD04G1198900 Malus domestica HOM05D004009 ORTHO05D004617 3.0e-10 68.6 94 41.5
MD12G1212100 Malus domestica HOM05D004009 ORTHO05D004617 3.0e-10 68.6 94 41.5
Nn3g21508 Nelumbo nucifera HOM05D004009 ORTHO05D004617 5.1e-10 67.8 89 41.6
Prupe.6G319700 Prunus persica HOM05D004009 ORTHO05D004617 5.1e-10 67.8 94 42.6
SalBow6G1513 Salvia bowleyana HOM05D004009 ORTHO05D004617 5.1e-10 67.8 98 41.8
Nitab4.5_0000726g0020 Nicotiana tabacum HOM05D004009 ORTHO05D004617 6.7e-10 67.4 98 38.8
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 1.1e-09 66.6 96 42.7
BcaB04g19687 Brassica carinata HOM05D004009 ORTHO05D004617 1.5e-09 66.2 96 39.6
Rhsim07G0190600 Rhododendron simsii HOM05D004009 ORTHO05D004617 1.5e-09 66.2 89 43.8
Migut.J01649 Erythranthe guttata HOM05D004009 ORTHO05D004617 2.0e-09 65.9 99 40.4
HanXRQChr11g0320811 Helianthus annuus HOM05D004009 ORTHO05D004617 2.0e-09 65.9 100 42.0
HanXRQChr11g0339871 Helianthus annuus HOM05D004009 ORTHO05D004617 2.0e-09 65.9 100 41.0
SGA_v2.0_scaffold105G30284 Striga asiatica HOM05D004009 ORTHO05D004617 2.5e-09 65.5 99 41.4
SGA_v2.0_scaffold3G01716 Striga asiatica HOM05D004009 ORTHO05D004617 2.5e-09 65.5 99 41.4
FAN09G2085 Fragaria x ananassa HOM05D004009 ORTHO05D004617 3.3e-09 65.1 93 40.9
Oeu053408.1 Olea europaea HOM05D004009 ORTHO05D004617 4.3e-09 64.7 99 40.4
vmacro19695 Vaccinium macrocarpon HOM05D004009 ORTHO05D004617 4.3e-09 64.7 94 41.5
FAN03G2789 Fragaria x ananassa HOM05D004009 ORTHO05D004617 5.7e-09 64.3 70 48.6
unitig_21.g20690 Utricularia gibba HOM05D004009 ORTHO05D004617 5.7e-09 64.3 98 40.8
HanXRQChr03g0090821 Helianthus annuus HOM05D004009 ORTHO05D004617 7.4e-09 63.9 100 41.0
Manes.08G116611 Manihot esculenta HOM05D004009 ORTHO05D004617 7.4e-09 63.9 94 36.2
SGA_v2.0_scaffold6G03272 Striga asiatica HOM05D004009 ORTHO05D004617 9.7e-09 63.5 99 39.4
Eucgr.K01592 Eucalyptus grandis HOM05D004009 ORTHO05D004617 2.2e-08 62.4 89 42.7
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 2.8e-08 62.0 95 38.9
Eucgr.F00513 Eucalyptus grandis HOM05D004009 ORTHO05D004617 3.7e-08 61.6 96 42.7
CSS0025576 Camellia sinensis var. sinensis HOM05D004009 ORTHO05D004617 4.8e-08 61.2 55 54.5
COL.COLO4_10533 Corchorus olitorius HOM05D004009 ORTHO05D004617 4.8e-08 61.2 59 54.2
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 6.3e-08 60.8 93 38.7
Eucgr.F00280 Eucalyptus grandis HOM05D004009 ORTHO05D004617 8.2e-08 60.5 66 48.5
Lsat_1_v5_gn_5_65061 Lactuca sativa HOM05D004009 ORTHO05D004617 1.1e-07 60.1 74 45.9
Rhsim05G0137900 Rhododendron simsii HOM05D004009 ORTHO05D004617 1.1e-07 60.1 96 37.5
MCO01G553 Micromonas commoda HOM05D004009 ORTHO05D004617 1.8e-07 59.3 90 38.9
BcaC04g23644 Brassica carinata HOM05D004009 ORTHO05D004617 3.1e-07 58.5 94 37.2
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 4.1e-07 58.2 69 42.0
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 4.1e-07 58.2 69 42.0
Lsat_1_v5_gn_7_71720 Lactuca sativa HOM05D004009 ORTHO05D004617 5.3e-07 57.8 73 43.8
FAN23G0674 Fragaria x ananassa HOM05D004009 ORTHO05D004617 1.2e-06 56.6 65 46.2
LjContig00081g0003615 Lotus japonicus HOM05D003043 ORTHO05D004617 2.6e-06 55.5 77 42.9
TAR365G0762 Trochodendron aralioides HOM05D004009 ORTHO05D004617 2.6e-06 55.5 80 41.2
Eucgr.F00523 Eucalyptus grandis HOM05D004009 ORTHO05D004617 4.5e-06 54.7 94 37.2


User provided reference genes

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