Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.6e-255 885.6 441 100.0
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 7.4e-144 514.6 468 56.6
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 3.1e-134 482.6 432 57.2
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 7.2e-131 471.5 456 55.5
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 5.7e-120 435.3 440 51.4
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 8.3e-119 431.4 448 50.7
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.4e-118 430.6 439 51.0
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 1.4e-118 430.6 447 50.8
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 2.4e-118 429.9 440 50.5
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 2.4e-118 429.9 440 51.4
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.4e-118 428.7 447 50.3
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 7.0e-118 428.3 448 50.2
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 9.2e-118 427.9 437 50.6
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 1.6e-117 427.2 439 50.8
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 3.5e-117 426.0 438 50.2
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 4.5e-117 425.6 448 49.6
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 5.9e-117 425.2 440 50.7
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.0e-116 424.5 439 49.0
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.3e-116 424.1 429 52.2
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.7e-116 423.7 440 50.9
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 8.6e-116 421.4 442 49.8
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 8.6e-116 421.4 436 50.0
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 1.5e-115 420.6 438 49.8
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 2.5e-115 419.9 452 50.0
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 4.3e-115 419.1 446 49.6
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 7.3e-115 418.3 439 49.7
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 9.5e-115 417.9 436 50.0
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 9.5e-115 417.9 442 49.8
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.2e-114 417.5 456 48.5
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.6e-114 417.2 448 50.0
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 2.1e-114 416.8 436 49.5
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 2.1e-114 416.8 437 50.1
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.1e-114 416.8 437 50.3
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 3.6e-114 416.0 441 49.9
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.0e-113 414.5 448 49.6
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.4e-113 414.1 447 49.4
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.8e-113 413.7 439 48.7
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.8e-113 413.7 438 50.0
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 2.3e-113 413.3 440 50.0
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.3e-113 413.3 438 49.5
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.1e-113 412.9 453 48.3
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 4.0e-113 412.5 439 49.0
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 5.2e-113 412.1 448 49.1
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 6.8e-113 411.8 448 48.7
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 6.8e-113 411.8 428 48.6
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 8.9e-113 411.4 439 49.2
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.2e-112 411.0 448 49.1
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.2e-112 411.0 440 49.3
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.5e-112 410.6 448 48.4
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.5e-112 410.6 448 48.4
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 2.0e-112 410.2 448 48.4
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 2.6e-112 409.8 451 48.6
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 2.6e-112 409.8 451 48.6
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 2.6e-112 409.8 439 49.7
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.6e-112 409.8 439 49.7
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.6e-112 409.8 437 49.4
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 2.6e-112 409.8 437 49.7
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 3.4e-112 409.5 448 49.3
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 3.4e-112 409.5 436 50.2
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.4e-112 409.1 439 48.5
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 5.8e-112 408.7 439 48.3
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 5.8e-112 408.7 439 49.0
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 5.8e-112 408.7 433 49.4
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 7.5e-112 408.3 448 48.7
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 7.5e-112 408.3 439 49.2
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 9.8e-112 407.9 439 48.3
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.3e-111 407.5 445 48.8
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.7e-111 407.1 431 50.3
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 1.7e-111 407.1 437 48.1
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.9e-111 406.4 448 48.7
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.9e-111 406.4 453 48.3
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.9e-111 406.4 442 48.6
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 3.7e-111 406.0 437 49.2
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 4.9e-111 405.6 466 47.0
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 4.9e-111 405.6 439 48.3
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 4.9e-111 405.6 429 49.0
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 6.4e-111 405.2 430 49.3
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.1e-110 404.4 443 48.1
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.1e-110 404.4 445 48.3
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 2.4e-110 403.3 432 49.5
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 1.6e-109 400.6 430 49.3
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 2.0e-109 400.2 439 47.4
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 2.7e-109 399.8 425 49.6
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 2.7e-109 399.8 430 48.1
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 3.5e-109 399.4 448 48.4
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 4.6e-109 399.1 447 48.1
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 6.0e-109 398.7 495 46.5
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.3e-108 397.5 439 47.4
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 6.6e-108 395.2 436 48.9
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 8.6e-108 394.8 427 49.2
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.6e-107 392.1 429 49.2
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.6e-107 392.1 429 49.2
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 9.5e-107 391.3 427 48.5
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.2e-106 391.0 439 47.6
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.2e-106 391.0 439 48.3
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.6e-106 390.6 427 47.3
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.6e-106 389.4 448 46.7
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 6.2e-106 388.7 451 46.6
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 8.0e-106 388.3 430 47.4
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 8.0e-106 388.3 435 46.7
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.4e-105 387.5 439 46.7
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 6.4e-103 378.6 528 42.4
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.4e-102 376.7 405 49.1
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 7.1e-102 375.2 425 46.4
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 5.1e-100 369.0 492 42.7
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 3.3e-99 366.3 452 44.7
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 3.5e-93 346.3 358 48.9
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 6.6e-92 342.0 425 45.2
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 3.1e-89 333.2 369 48.5
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-87 327.8 423 44.2
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 3.0e-84 316.6 377 46.2
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 8.7e-84 315.1 437 41.2
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 9.9e-80 301.6 457 40.5
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 2.2e-79 300.4 445 40.4
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.8e-73 280.8 450 38.7
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.7e-71 274.2 367 43.6
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 3.8e-71 273.1 318 45.6
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.4e-65 253.8 290 46.6
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 7.1e-62 242.3 299 43.8
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.3e-58 231.5 466 34.5
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.8e-58 230.3 486 33.1
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 2.6e-56 223.8 388 37.4
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 4.5e-56 223.0 281 45.2
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 7.2e-46 189.1 245 43.7
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 3.0e-44 183.7 205 46.8
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.8e-42 177.2 446 30.9
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 7.7e-40 169.1 367 32.7
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 5.7e-35 152.9 126 59.5
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.7e-31 141.4 327 31.8
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 1.6e-29 134.8 178 44.9
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.1e-29 134.4 134 51.5
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-25 121.7 90 64.4
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.7e-19 99.8 100 51.0
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 8.3e-10 69.3 47 74.5
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 9.2e-09 65.9 60 56.7
Rhsim04G0160100 Rhododendron simsii HOM05D000686 ORTHO05D000512 3.5e-08 63.9 334 25.4


User provided reference genes

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