Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0520 Selaginella moellendorffii HOM05D003446 ORTHO05D003915 2.4e-87 325.5 166 100.0
Zm00001eb288700 Zea mays HOM05D003446 ORTHO05D003915 2.5e-23 112.8 154 44.8
Os05g0451300 Oryza sativa ssp. japonica HOM05D003446 ORTHO05D003915 4.2e-23 112.1 154 44.2
EL10Ac6g15684 Beta vulgaris HOM05D003446 ORTHO05D003915 2.7e-22 109.4 161 46.6
Nn2g11351 Nelumbo nucifera HOM05D003446 ORTHO05D003915 8.7e-21 104.4 163 47.2
Glyma.01G190300 Glycine max HOM05D003446 ORTHO05D003915 1.1e-20 104.0 155 44.5
Gohir.D12G071400 Gossypium hirsutum HOM05D003446 ORTHO05D003915 1.5e-20 103.6 155 41.9
Hund16368 Selenicereus undatus HOM05D003446 ORTHO05D003915 1.9e-20 103.2 159 42.1
AagrBONN_evm.TU.Sc2ySwM_228.1259 Anthoceros agrestis HOM05D001230 ORTHO05D001067 4.3e-20 102.1 153 41.8
TAR402G0007 Trochodendron aralioides HOM05D003446 ORTHO05D003915 4.3e-20 102.1 155 45.2
Gohir.A12G074100 Gossypium hirsutum HOM05D003446 ORTHO05D003915 5.7e-20 101.7 155 41.9
Gorai.008G079000 Gossypium raimondii HOM05D003446 ORTHO05D003915 5.7e-20 101.7 155 41.9
QL06p039988 Quercus lobata HOM05D003446 ORTHO05D003915 7.4e-20 101.3 152 40.1
Sabra09G0028900 Salix brachista HOM05D003446 ORTHO05D003915 9.7e-20 100.9 151 43.0
Lj2g0019205 Lotus japonicus HOM05D003446 ORTHO05D003915 2.8e-19 99.4 153 39.9
Phvul.002G014901 Phaseolus vulgaris HOM05D003446 ORTHO05D003915 3.7e-19 99.0 158 41.8
Os03g0265900 Oryza sativa ssp. japonica HOM05D003446 ORTHO05D003915 1.4e-18 97.1 152 43.4
Lsat_1_v5_gn_4_162940 Lactuca sativa HOM05D003446 ORTHO05D003915 1.8e-18 96.7 157 38.9
C07p62330 Brassica napus HOM05D003446 ORTHO05D003915 2.4e-18 96.3 160 41.2
Thecc.01G064800 Theobroma cacao HOM05D003446 ORTHO05D003915 3.1e-18 95.9 156 41.0
BcaNung02048 Brassica carinata HOM05D003446 ORTHO05D003915 4.1e-18 95.5 160 41.2
CAN.G538.3 Capsicum annuum HOM05D003446 ORTHO05D003915 4.1e-18 95.5 155 41.3
ECA236G4759 Erigeron canadensis HOM05D003446 ORTHO05D003915 4.1e-18 95.5 161 41.0
CiPaw.01G009700 Carya illinoinensis HOM05D003446 ORTHO05D003915 5.3e-18 95.1 158 41.1
SGA_v2.0_scaffold77G25285 Striga asiatica HOM05D003446 ORTHO05D003915 5.3e-18 95.1 154 43.5
Actinidia16456 Actinidia chinensis HOM05D003446 ORTHO05D003915 6.9e-18 94.7 159 38.4
TWI79G0878 Tripterygium wilfordii HOM05D003446 ORTHO05D003915 9.0e-18 94.4 152 42.1
HanXRQChr15g0491841 Helianthus annuus HOM05D003446 ORTHO05D003915 1.2e-17 94.0 153 37.9
Nn5g30439 Nelumbo nucifera HOM05D003446 ORTHO05D003915 1.2e-17 94.0 158 39.9
BolC7t46649H Brassica oleracea HOM05D003446 ORTHO05D003915 1.5e-17 93.6 160 40.6
Duzib187G1258 Durio zibethinus HOM05D003446 ORTHO05D003915 1.5e-17 93.6 157 41.4
Gohir.A03G048300 Gossypium hirsutum HOM05D003446 ORTHO05D003915 1.5e-17 93.6 151 41.7
Gorai.003G125200 Gossypium raimondii HOM05D003446 ORTHO05D003915 1.5e-17 93.6 151 41.7
Medtr5g016450 Medicago truncatula HOM05D003446 ORTHO05D003915 1.5e-17 93.6 154 39.6
VMungo1215G1902 Vigna mungo HOM05D003446 ORTHO05D003915 1.5e-17 93.6 157 42.0
Cc01_g13730 Coffea canephora HOM05D003446 ORTHO05D003915 2.0e-17 93.2 151 41.1
Duzib168G0523 Durio zibethinus HOM05D003446 ORTHO05D003915 2.0e-17 93.2 151 42.4
Actinidia21252 Actinidia chinensis HOM05D003446 ORTHO05D003915 2.6e-17 92.8 159 38.4
Gohir.D03G118800 Gossypium hirsutum HOM05D003446 ORTHO05D003915 2.6e-17 92.8 151 41.7
Nitab4.5_0002405g0050 Nicotiana tabacum HOM05D003446 ORTHO05D003915 2.6e-17 92.8 154 39.0
Prupe.6G227700 Prunus persica HOM05D003446 ORTHO05D003915 2.6e-17 92.8 160 36.9
Sp7g34970 Schrenkiella parvula HOM05D003446 ORTHO05D003915 2.6e-17 92.8 157 37.6
GSVIVG01024811001 Vitis vinifera HOM05D003446 ORTHO05D003915 2.6e-17 92.8 154 42.9
CARHR245700 Cardamine hirsuta HOM05D003446 ORTHO05D003915 3.4e-17 92.4 155 38.7
Peaxi162Scf00216g01419 Petunia axillaris HOM05D003446 ORTHO05D003915 3.4e-17 92.4 160 41.2
Peaxi162Scf00842g00015 Petunia axillaris HOM05D003446 ORTHO05D003915 3.4e-17 92.4 160 41.2
Thhalv10026399m.g Eutrema salsugineum HOM05D003446 ORTHO05D003915 4.5e-17 92.0 157 36.3
TPR.G26863 Trifolium pratense HOM05D003446 ORTHO05D003915 4.5e-17 92.0 157 40.1
GSVIVG01000208001 Vitis vinifera HOM05D003446 ORTHO05D003915 4.5e-17 92.0 159 39.0
ATR0618G355 Amborella trichopoda HOM05D003446 ORTHO05D003915 5.9e-17 91.7 151 41.7
Migut.N00812 Erythranthe guttata HOM05D003446 ORTHO05D003915 5.9e-17 91.7 154 41.6
Eucgr.I00751 Eucalyptus grandis HOM05D003446 ORTHO05D003915 5.9e-17 91.7 163 39.3
AL7G13540 Arabidopsis lyrata HOM05D003446 ORTHO05D003915 7.7e-17 91.3 165 39.4
A01p01670 Brassica napus HOM05D003446 ORTHO05D003915 1.0e-16 90.9 153 35.9
Eucgr.I00795 Eucalyptus grandis HOM05D003446 ORTHO05D003915 1.0e-16 90.9 159 37.7
Haze_15338 Corylus avellana HOM05D003446 ORTHO05D003915 1.3e-16 90.5 159 37.7
Actinidia38843 Actinidia chinensis HOM05D003446 ORTHO05D003915 1.7e-16 90.1 155 41.3
SEGI_03543 Sequoiadendron giganteum HOM05D003446 ORTHO05D003915 1.7e-16 90.1 154 41.6
Sc03g0001910 Simmondsia chinensis HOM05D003446 ORTHO05D003915 1.7e-16 90.1 157 37.6
CDE04G1890 Ceratophyllum demersum HOM05D003446 ORTHO05D003915 2.2e-16 89.7 152 40.1
HanXRQChr05g0135531 Helianthus annuus HOM05D003446 ORTHO05D003915 2.2e-16 89.7 153 42.5
Lj1A143T43 Lonicera japonica HOM05D003446 ORTHO05D003915 2.2e-16 89.7 151 41.7
HPP92_015338 Vanilla planifolia HOM05D003446 ORTHO05D003915 2.2e-16 89.7 152 38.8
AT4G37300 Arabidopsis thaliana HOM05D003446 ORTHO05D003915 2.9e-16 89.4 161 39.1
BraA01t00157Z Brassica rapa HOM05D003446 ORTHO05D003915 2.9e-16 89.4 155 37.4
Duzib147G1454 Durio zibethinus HOM05D003446 ORTHO05D003915 2.9e-16 89.4 156 37.8
Glyma.11G051900 Glycine max HOM05D003446 ORTHO05D003915 2.9e-16 89.4 155 43.2
BcaNung02537 Brassica carinata HOM05D003446 ORTHO05D003915 3.8e-16 89.0 153 35.3
BcaNung02538 Brassica carinata HOM05D003446 ORTHO05D003915 3.8e-16 89.0 153 35.3
C01p01830 Brassica napus HOM05D003446 ORTHO05D003915 3.8e-16 89.0 155 37.4
BolC1t00175H Brassica oleracea HOM05D003446 ORTHO05D003915 3.8e-16 89.0 153 35.3
Ciclev10029307m.g Citrus clementina HOM05D003446 ORTHO05D003915 3.8e-16 89.0 154 43.5
Nitab4.5_0000880g0040 Nicotiana tabacum HOM05D003446 ORTHO05D003915 3.8e-16 89.0 155 39.4
Ciclev10026594m.g Citrus clementina HOM05D003446 ORTHO05D003915 5.0e-16 88.6 157 40.8
Manes.13G117600 Manihot esculenta HOM05D003446 ORTHO05D003915 5.0e-16 88.6 155 39.4
Carub.0007s0298 Capsella rubella HOM05D003446 ORTHO05D003915 6.5e-16 88.2 159 36.5
Dinv14473 Davidia involucrata HOM05D003446 ORTHO05D003915 8.5e-16 87.8 151 41.1
FvH4_1g16910 Fragaria vesca HOM05D003446 ORTHO05D003915 8.5e-16 87.8 160 41.2
Hma1.2p1_3153F.1_g333290 Hydrangea macrophylla HOM05D003446 ORTHO05D003915 8.5e-16 87.8 157 36.9
PGR004G1858 Punica granatum HOM05D003446 ORTHO05D003915 8.5e-16 87.8 166 38.6
PSO384G2641 Papaver somniferum HOM05D003446 ORTHO05D003915 1.1e-15 87.4 157 42.7
SalBow2G2679 Salvia bowleyana HOM05D003446 ORTHO05D003915 1.4e-15 87.0 152 38.8
arahy.Tifrunner.gnm1.ann1.SZPL62 Arachis hypogaea HOM05D003446 ORTHO05D003915 1.9e-15 86.7 159 36.5
EL10Ac7g16108 Beta vulgaris HOM05D003446 ORTHO05D003915 1.9e-15 86.7 151 39.7
COL.COLO4_19086 Corchorus olitorius HOM05D003446 ORTHO05D003915 1.9e-15 86.7 153 38.6
vmacro17976 Vaccinium macrocarpon HOM05D003446 ORTHO05D003915 1.9e-15 86.7 153 37.9
Cc07_g06490 Coffea canephora HOM05D003446 ORTHO05D003915 2.5e-15 86.3 152 35.5
FAN19G2839 Fragaria x ananassa HOM05D003446 ORTHO05D003915 2.5e-15 86.3 157 40.8
Thecc.09G307400 Theobroma cacao HOM05D003446 ORTHO05D003915 2.5e-15 86.3 151 40.4
TWI53G2047 Tripterygium wilfordii HOM05D003446 ORTHO05D003915 2.5e-15 86.3 154 40.9
Hma1.2p1_0017F.1_g011890 Hydrangea macrophylla HOM05D003446 ORTHO05D003915 3.2e-15 85.9 157 36.3
RcHm_v2.0_Chr2g0106961 Rosa chinensis HOM05D003446 ORTHO05D003915 3.2e-15 85.9 158 38.6
PGSC0003DMG400020844 Solanum tuberosum HOM05D003446 ORTHO05D003915 3.2e-15 85.9 154 40.3
Aqoxy1G00728 Aquilegia oxysepala HOM05D003446 ORTHO05D003915 4.2e-15 85.5 153 39.9
CDE03G0004 Ceratophyllum demersum HOM05D003446 ORTHO05D003915 4.2e-15 85.5 152 38.2
Hund18865 Selenicereus undatus HOM05D003446 ORTHO05D003915 4.2e-15 85.5 154 39.6
CSS0014722 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 5.5e-15 85.1 151 38.4
Cfa004075 Carpinus fangiana HOM05D003446 ORTHO05D003915 5.5e-15 85.1 161 37.9
Dinv26875 Davidia involucrata HOM05D003446 ORTHO05D003915 5.5e-15 85.1 153 35.3
MD02G1179600 Malus domestica HOM05D003446 ORTHO05D003915 5.5e-15 85.1 158 37.3
Potri.009G041100 Populus trichocarpa HOM05D003446 ORTHO05D003915 5.5e-15 85.1 152 38.8
Solyc06g006000.3 Solanum lycopersicum HOM05D003446 ORTHO05D003915 5.5e-15 85.1 154 40.3
MSTRG.2847 Avicennia marina HOM05D003446 ORTHO05D003915 7.2e-15 84.7 155 36.8
THA.LOC104819864 Tarenaya hassleriana HOM05D003446 ORTHO05D003915 7.2e-15 84.7 166 40.4
Atru.chr3.4056 Acer truncatum HOM05D003446 ORTHO05D003915 9.4e-15 84.3 151 39.7
Actinidia25129 Actinidia chinensis HOM05D003446 ORTHO05D003915 9.4e-15 84.3 151 39.7
MELO3C019205.2 Cucumis melo HOM05D003446 ORTHO05D003915 9.4e-15 84.3 160 36.2
Oeu035016.1 Olea europaea HOM05D003446 ORTHO05D003915 9.4e-15 84.3 151 38.4
PSO339G6551 Papaver somniferum HOM05D003446 ORTHO05D003915 9.4e-15 84.3 169 40.8
PGR119G0877 Punica granatum HOM05D003446 ORTHO05D003915 9.4e-15 84.3 151 39.1
TAR376G0778 Trochodendron aralioides HOM05D003446 ORTHO05D003915 1.2e-14 84.0 158 38.6
MSTRG.17869 Avicennia marina HOM05D003446 ORTHO05D003915 1.6e-14 83.6 152 39.5
Mapoly0014s0108 Marchantia polymorpha HOM05D003446 ORTHO05D003915 1.6e-14 83.6 154 37.7
unitig_26.g10204 Utricularia gibba HOM05D003446 ORTHO05D003915 1.6e-14 83.6 151 39.7
Ah.02g125720 Amaranthus hybridus HOM05D026984 ORTHO05D003915 2.1e-14 83.2 157 36.9
DCAR_018941 Daucus carota HOM05D003446 ORTHO05D003915 2.1e-14 83.2 150 39.3
FAN28G0024 Fragaria x ananassa HOM05D003446 ORTHO05D003915 2.1e-14 83.2 157 36.9
SEGI_14129 Sequoiadendron giganteum HOM05D003446 ORTHO05D003915 2.1e-14 83.2 151 38.4
PGSC0003DMG400024982 Solanum tuberosum HOM05D003446 ORTHO05D003915 2.1e-14 83.2 152 34.2
FAN16G2611 Fragaria x ananassa HOM05D003446 ORTHO05D003915 2.7e-14 82.8 150 38.7
Sopen02g037450 Solanum pennellii HOM05D003446 ORTHO05D003915 2.7e-14 82.8 153 35.3
Sopen06g001980 Solanum pennellii HOM05D003446 ORTHO05D003915 2.7e-14 82.8 154 40.3
Cpa.g.sc6.90 Carica papaya HOM05D003446 ORTHO05D003915 3.6e-14 82.4 167 35.9
Manes.02G122700 Manihot esculenta HOM05D003446 ORTHO05D003915 3.6e-14 82.4 152 38.2
Rhsim13G0074100 Rhododendron simsii HOM05D003446 ORTHO05D003915 3.6e-14 82.4 151 37.1
TAR381G0964 Trochodendron aralioides HOM05D003446 ORTHO05D003915 3.6e-14 82.4 162 35.8
FAN21G1385 Fragaria x ananassa HOM05D003446 ORTHO05D003915 4.6e-14 82.0 150 39.3
FAN25G0028 Fragaria x ananassa HOM05D003446 ORTHO05D003915 4.6e-14 82.0 150 38.7
Pp3c8_16060 Physcomitrium patens HOM05D003446 ORTHO05D003915 4.6e-14 82.0 152 37.5
Sed0017405 Sechium edule HOM05D003446 ORTHO05D003915 4.6e-14 82.0 154 38.3
CiPaw.13G082900 Carya illinoinensis HOM05D003446 ORTHO05D003915 6.1e-14 81.6 151 39.1
Dinv30043 Davidia involucrata HOM05D003446 ORTHO05D003915 6.1e-14 81.6 153 33.3
Eucgr.J01950 Eucalyptus grandis HOM05D003446 ORTHO05D003915 6.1e-14 81.6 151 38.4
MD03G1078000 Malus domestica HOM05D003446 ORTHO05D003915 6.1e-14 81.6 150 38.7
CsaV3_1G035970 Cucumis sativus L. HOM05D003446 ORTHO05D003915 7.9e-14 81.3 153 37.9
FvH4_3g37870 Fragaria vesca HOM05D003446 ORTHO05D003915 7.9e-14 81.3 150 38.0
FAN11G3995 Fragaria x ananassa HOM05D003446 ORTHO05D003915 7.9e-14 81.3 150 38.0
BcaNung02955 Brassica carinata HOM05D003446 ORTHO05D003915 1.0e-13 80.9 165 34.5
CsaV3_2G035470 Cucumis sativus L. HOM05D003446 ORTHO05D003915 1.0e-13 80.9 162 36.4
Solyc02g092880.3 Solanum lycopersicum HOM05D003446 ORTHO05D003915 1.0e-13 80.9 153 35.3
CANSAT54G0299 Cannabis sativa HOM05D003446 ORTHO05D003915 1.4e-13 80.5 160 36.2
Medtr3g462220 Medicago truncatula HOM05D003446 ORTHO05D003915 1.4e-13 80.5 154 39.0
RcHm_v2.0_Chr5g0068081 Rosa chinensis HOM05D003446 ORTHO05D003915 1.4e-13 80.5 150 38.0
vmacro03001 Vaccinium macrocarpon HOM05D003446 ORTHO05D003915 1.4e-13 80.5 152 40.1
CSS0013529 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 1.8e-13 80.1 156 34.6
CSS0024799 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 1.8e-13 80.1 156 35.9
ClCG02G008200 Citrullus lanatus HOM05D003446 ORTHO05D003915 1.8e-13 80.1 159 34.6
Oeu015921.1 Olea europaea HOM05D003446 ORTHO05D003915 1.8e-13 80.1 161 37.9
Sabra07G0044000 Salix brachista HOM05D003446 ORTHO05D003915 1.8e-13 80.1 159 37.7
QL01p027392 Quercus lobata HOM05D003446 ORTHO05D003915 2.3e-13 79.7 158 37.3
QL93p2004_0016 Quercus lobata HOM05D003446 ORTHO05D003915 2.3e-13 79.7 158 37.3
unitig_749.g13766 Utricularia gibba HOM05D003446 ORTHO05D003915 2.3e-13 79.7 159 39.0
Aa31LG6G14170 Aethionema arabicum HOM05D003446 ORTHO05D003915 3.9e-13 79.0 172 35.5
Cfa011633 Carpinus fangiana HOM05D003446 ORTHO05D003915 3.9e-13 79.0 151 37.7
CiPaw.13G083100 Carya illinoinensis HOM05D003446 ORTHO05D003915 3.9e-13 79.0 152 38.8
AUR62001704 Chenopodium quinoa HOM05D003446 ORTHO05D003915 5.1e-13 78.6 150 36.7
Ca_24736_v3 Cicer arietinum L. HOM05D003446 ORTHO05D003915 5.1e-13 78.6 164 34.1
COL.COLO4_11498 Corchorus olitorius HOM05D003446 ORTHO05D003915 1.1e-12 77.4 147 40.1
Phvul.006G063800 Phaseolus vulgaris HOM05D003446 ORTHO05D003915 1.1e-12 77.4 153 38.6
Prupe.6G063000 Prunus persica HOM05D003446 ORTHO05D003915 1.5e-12 77.0 159 34.6
TPR.G30108 Trifolium pratense HOM05D003446 ORTHO05D003915 1.5e-12 77.0 154 37.0
arahy.Tifrunner.gnm1.ann1.TI8HRK Arachis hypogaea HOM05D003446 ORTHO05D003915 2.0e-12 76.6 153 39.2
MD11G1082600 Malus domestica HOM05D003446 ORTHO05D003915 2.0e-12 76.6 150 36.7
Nitab4.5_0001439g0030 Nicotiana tabacum HOM05D003446 ORTHO05D003915 2.0e-12 76.6 153 33.3
Glyma.18G067500 Glycine max HOM05D003446 ORTHO05D003915 3.3e-12 75.9 154 38.3
AUR62020077 Chenopodium quinoa HOM05D003446 ORTHO05D003915 4.3e-12 75.5 150 36.0
Nn1g04669 Nelumbo nucifera HOM05D003446 ORTHO05D003915 4.3e-12 75.5 158 34.2
Lj6g0014075 Lotus japonicus HOM05D003446 ORTHO05D003915 5.7e-12 75.1 152 37.5
arahy.Tifrunner.gnm1.ann1.6X3X3D Arachis hypogaea HOM05D003446 ORTHO05D003915 7.4e-12 74.7 153 39.2
Ca_14891_v3 Cicer arietinum L. HOM05D003446 ORTHO05D003915 7.4e-12 74.7 154 37.0
VMungo0540G2401 Vigna mungo HOM05D003446 ORTHO05D003915 1.3e-11 73.9 153 37.3
Sc06g0007160 Simmondsia chinensis HOM05D003446 ORTHO05D003915 2.2e-11 73.2 151 37.1
Lsat_1_v5_gn_8_72121 Lactuca sativa HOM05D003446 ORTHO05D003915 4.8e-11 72.0 152 37.5
Haze_24238 Corylus avellana HOM05D003446 ORTHO05D003915 6.3e-11 71.6 151 37.7
Lalb_Chr15g0082611 Lupinus albus HOM05D003446 ORTHO05D003915 8.2e-11 71.2 154 37.7
HPP92_012623 Vanilla planifolia HOM05D003446 ORTHO05D003915 1.4e-10 70.5 126 43.7
Hma1.2p1_0227F.1_g096150 Hydrangea macrophylla HOM05D003446 ORTHO05D003915 6.9e-10 68.2 78 50.0
Pp3c23_2900 Physcomitrium patens HOM05D003446 ORTHO05D003915 6.9e-10 68.2 158 32.3
arahy.Tifrunner.gnm1.ann1.CXZ5TN Arachis hypogaea HOM05D003446 ORTHO05D003915 2.0e-09 66.6 107 39.3
MBI14_g32938_MAGBIO Magnolia biondii HOM05D003446 ORTHO05D003915 2.9e-08 62.8 105 39.0
Psat2g168880 Pisum sativum HOM05D003446 ORTHO05D003915 5.0e-08 62.0 107 36.4
Dinv30045 Davidia involucrata HOM05D003446 ORTHO05D003915 6.5e-08 61.6 153 31.4
Glyma.08G334500 Glycine max HOM05D003446 ORTHO05D003915 1.9e-07 60.1 152 32.9
CiPaw.08G174200 Carya illinoinensis HOM05D003446 ORTHO05D003915 7.2e-07 58.2 101 39.6


User provided reference genes

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