Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 2.8e-143 511.9 259 100.0
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 2.8e-74 282.7 257 54.1
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 8.1e-74 281.2 270 54.8
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 1.7e-71 273.5 253 53.8
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 4.2e-70 268.9 245 55.1
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 2.7e-69 266.2 241 52.7
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 1.3e-68 263.8 247 51.8
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 5.1e-68 261.9 247 53.4
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 6.7e-68 261.5 248 51.2
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 1.9e-67 260.0 245 52.7
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 3.3e-67 259.2 256 51.6
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 4.3e-67 258.8 246 51.6
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 9.6e-67 257.7 247 53.4
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 2.1e-66 256.5 249 51.4
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 2.1e-66 256.5 241 50.6
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 3.7e-66 255.8 246 48.8
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 3.7e-66 255.8 245 52.7
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 8.2e-66 254.6 245 52.7
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.4e-65 253.8 242 51.7
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 2.4e-65 253.1 250 50.0
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 2.4e-65 253.1 247 50.2
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 3.1e-65 252.7 245 50.6
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 5.3e-65 251.9 241 51.5
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 6.9e-65 251.5 241 49.0
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 9.0e-65 251.1 242 50.8
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 9.0e-65 251.1 242 50.8
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 1.5e-64 250.4 237 53.6
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 1.5e-64 250.4 241 49.0
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 1.5e-64 250.4 248 50.0
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 2.0e-64 250.0 241 49.0
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 2.0e-64 250.0 242 49.2
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 2.0e-64 250.0 243 50.6
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 3.4e-64 249.2 259 47.5
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 3.4e-64 249.2 242 50.0
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 3.4e-64 249.2 245 47.8
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 5.8e-64 248.4 242 49.2
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 7.6e-64 248.1 241 47.3
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 1.0e-63 247.7 242 48.8
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 1.7e-63 246.9 270 47.8
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 4.9e-63 245.4 241 48.5
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 8.4e-63 244.6 245 49.0
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 1.1e-62 244.2 259 47.9
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.4e-62 243.8 241 47.7
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 1.4e-62 243.8 253 49.4
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 1.9e-62 243.4 263 48.3
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 3.2e-62 242.7 241 46.9
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 4.2e-62 242.3 255 49.4
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 4.2e-62 242.3 243 46.9
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.1e-62 241.5 261 46.4
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 9.3e-62 241.1 234 50.4
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.2e-61 240.7 249 50.2
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 2.1e-61 240.0 235 50.6
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 2.7e-61 239.6 236 52.1
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 3.5e-61 239.2 245 49.8
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 4.6e-61 238.8 271 45.4
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 7.9e-61 238.0 251 46.2
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 3.9e-60 235.7 258 46.5
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 5.1e-60 235.3 262 46.2
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.1e-60 235.3 261 45.6
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 5.1e-60 235.3 239 47.3
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 6.7e-60 235.0 245 48.6
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 6.7e-60 235.0 241 47.3
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 8.7e-60 234.6 265 43.0
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.9e-59 233.4 229 48.0
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 3.3e-59 232.6 253 48.6
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 5.7e-59 231.9 209 52.2
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 3.7e-58 229.2 246 45.5
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 3.7e-58 229.2 248 47.2
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 6.3e-58 228.4 270 45.2
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 2.4e-57 226.5 224 47.8
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 2.4e-57 226.5 255 47.5
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.2e-56 224.2 256 45.3
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 2.9e-55 219.5 266 44.0
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 2.9e-55 219.5 253 46.6
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 3.2e-54 216.1 228 48.7
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 4.6e-53 212.2 240 45.4
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 7.9e-53 211.5 233 48.1
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 5.7e-51 205.3 244 47.1
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 2.8e-50 203.0 206 50.0
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 4.1e-49 199.1 237 43.0
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 2.0e-48 196.8 267 42.7
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.2e-47 193.4 204 49.5
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.9e-46 190.3 206 48.5
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 4.2e-46 189.1 238 42.4
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 1.6e-45 187.2 189 46.6
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 6.1e-45 185.3 246 43.9
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 2.0e-43 180.3 198 47.0
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 2.8e-42 176.4 180 49.4
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.2e-40 171.0 162 51.9
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 5.9e-40 168.7 381 30.7
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.7e-40 168.3 260 38.1
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.7e-40 168.3 260 38.1
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 1.7e-39 167.2 230 39.1
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 1.7e-39 167.2 165 50.3
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 3.8e-39 166.0 153 52.3
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 6.5e-39 165.2 153 54.2
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 4.2e-38 162.5 188 43.6
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 6.1e-37 158.7 161 49.7
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.5e-35 154.1 135 54.8
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 5.7e-35 152.1 261 36.0
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 8.2e-34 148.3 207 38.2
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 1.5e-30 137.5 247 36.4
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 4.2e-30 136.0 187 40.6
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.2e-29 134.4 128 44.5
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 1.2e-29 134.4 139 48.9
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 2.1e-29 133.7 128 44.5
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 2.7e-29 133.3 128 47.7
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 3.6e-29 132.9 122 52.5
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 1.8e-28 130.6 128 43.8
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 1.8e-28 130.6 128 43.8
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 5.2e-28 129.0 237 33.8
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 7.5e-27 125.2 114 52.6
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 2.2e-26 123.6 131 41.2
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 2.7e-24 116.7 290 30.3
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 2.7e-24 116.7 145 42.1
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 1.3e-23 114.4 118 47.5
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 3.4e-19 99.8 230 30.4
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 5.7e-19 99.0 95 49.5
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 9.8e-19 98.2 117 42.7
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 6.3e-18 95.5 100 47.0
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 4.1e-17 92.8 89 49.4
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 9.1e-17 91.7 100 48.0
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.6e-16 90.9 103 44.7
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 2.9e-15 86.7 93 47.3
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.9e-15 86.7 71 54.9
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 6.6e-15 85.5 93 43.0
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.6e-13 80.9 68 51.5
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 1.0e-12 78.2 56 58.9
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 3.0e-12 76.6 103 41.7
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.6e-08 64.3 67 44.8
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 2.9e-07 60.1 61 49.2


User provided reference genes

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