Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 0.0e+00 1295.8 627 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 2.2e-226 789.3 632 58.7
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.0e-219 766.1 632 58.2
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 5.4e-188 661.8 641 50.9
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 2.3e-183 646.4 643 49.6
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 2.0e-182 643.3 643 49.6
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 2.9e-181 639.4 643 49.5
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 3.2e-180 636.0 643 49.3
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 4.1e-180 635.6 642 49.2
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 7.0e-180 634.8 644 49.2
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.2e-179 634.0 643 49.3
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 1.6e-179 633.6 642 48.8
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 2.0e-179 633.3 640 49.4
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 2.0e-179 633.3 640 49.4
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 1.0e-178 630.9 642 48.3
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 1.3e-178 630.6 642 48.4
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.7e-178 630.2 643 49.0
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 6.6e-178 628.2 643 49.0
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 5.6e-177 625.2 642 48.3
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 1.2e-176 624.0 644 48.0
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.2e-176 624.0 639 47.9
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 2.1e-176 623.2 642 48.3
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 3.6e-176 622.5 643 48.4
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 3.1e-175 619.4 641 48.0
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 4.0e-175 619.0 642 48.9
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.2e-174 617.5 647 47.9
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 1.5e-174 617.1 654 47.1
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.5e-174 617.1 641 48.0
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 1.5e-174 617.1 645 47.3
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 9.8e-174 614.4 640 47.5
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 9.8e-174 614.4 641 47.0
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 1.7e-173 613.6 643 48.7
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 2.2e-173 613.2 646 46.6
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 2.9e-173 612.8 642 47.8
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 3.2e-172 609.4 642 47.7
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 5.4e-172 608.6 621 48.8
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 9.2e-172 607.8 641 46.8
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 3.5e-171 605.9 642 47.4
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 7.8e-171 604.7 642 47.5
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 2.5e-169 599.7 651 46.1
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 1.6e-168 597.0 639 47.4
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 8.1e-168 594.7 641 47.3
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.9e-164 583.6 640 45.8
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 3.2e-164 582.8 642 45.8
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 7.1e-164 581.6 631 46.0
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 2.1e-163 580.1 598 47.8
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.1e-161 574.3 611 46.5
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 5.6e-161 572.0 648 44.8
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 3.6e-160 569.3 638 44.8
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 3.6e-160 569.3 638 44.8
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 3.6e-160 569.3 647 46.4
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 8.9e-159 564.7 637 44.4
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 1.5e-158 563.9 640 44.2
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.5e-158 563.9 640 44.5
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.9e-157 559.7 642 44.9
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 1.2e-152 544.3 643 44.0
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.6e-152 543.9 734 41.3
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.5e-150 537.3 646 43.0
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 9.6e-145 518.1 640 42.0
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.1e-143 514.6 543 46.8
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.5e-137 493.4 555 45.2
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 4.5e-78 296.6 369 42.8
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 6.6e-69 266.2 208 55.3
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 4.3e-52 210.3 261 41.8
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 2.0e-49 201.4 312 38.1
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 1.0e-45 189.1 252 40.5
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 3.0e-45 187.6 274 37.2
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 3.0e-45 187.6 252 39.3
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 1.9e-44 184.9 252 38.5
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 2.5e-44 184.5 252 39.3
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 4.3e-44 183.7 253 39.1
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 1.2e-43 182.2 252 38.5
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 3.6e-43 180.6 372 31.5
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 8.1e-43 179.5 274 37.6
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 1.2e-41 175.6 252 40.1
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 1.2e-41 175.6 224 41.5
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.5e-41 175.3 385 31.4
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 2.6e-41 174.5 372 32.5
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 3.4e-41 174.1 372 32.3
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 7.6e-41 172.9 252 39.7
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 1.3e-40 172.2 360 32.2
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 2.2e-40 171.4 374 30.5
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 4.9e-40 170.2 369 31.2
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 4.9e-40 170.2 371 31.3
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 6.4e-40 169.9 360 31.1
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 8.4e-40 169.5 373 30.8
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.1e-39 169.1 376 31.4
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.1e-39 169.1 377 30.8
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 2.4e-39 167.9 388 29.6
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 9.2e-39 166.0 353 29.7
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.6e-38 165.2 371 31.0
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.6e-38 165.2 373 30.6
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.6e-38 165.2 369 30.9
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 3.5e-38 164.1 367 31.9
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 3.5e-38 164.1 367 31.9
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 3.5e-38 164.1 371 30.2
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 3.5e-38 164.1 380 31.3
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 6.0e-38 163.3 371 31.0
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 7.8e-38 162.9 252 36.9
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 7.8e-38 162.9 369 30.4
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 1.0e-37 162.5 367 30.2
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 2.3e-37 161.4 369 30.4
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 3.0e-37 161.0 375 31.5
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 5.1e-37 160.2 366 29.5
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 6.6e-37 159.8 373 30.6
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 1.5e-36 158.7 368 31.0
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.9e-36 158.3 372 29.8
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 1.9e-36 158.3 370 30.5
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.9e-36 158.3 370 28.4
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 2.5e-36 157.9 367 30.0
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 4.3e-36 157.1 368 31.5
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 4.3e-36 157.1 130 56.2
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.6e-36 156.8 377 29.2
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 7.3e-36 156.4 381 29.7
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.2e-35 155.6 373 29.8
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 2.8e-35 154.5 380 29.2
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.8e-35 154.5 382 30.1
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 6.2e-35 153.3 365 31.0
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 8.1e-35 152.9 373 29.0
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.1e-34 152.5 383 28.2
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.1e-34 152.5 363 30.6
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.1e-34 152.5 363 30.3
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.4e-34 152.1 382 29.6
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.8e-34 151.8 367 28.6
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 2.4e-34 151.4 371 28.8
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 5.2e-34 150.2 368 28.8
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 1.5e-33 148.7 373 30.8
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.5e-33 148.7 369 29.0
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.5e-33 148.7 373 28.7
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 2.0e-33 148.3 363 29.5
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.0e-33 148.3 374 28.1
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.6e-33 147.9 369 28.7
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 7.6e-33 146.4 368 30.2
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 7.6e-33 146.4 395 27.6
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 9.9e-33 146.0 392 28.8
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 2.9e-32 144.4 357 28.6
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 2.9e-32 144.4 370 29.5
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 3.8e-32 144.1 373 28.7
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 1.9e-31 141.7 369 28.7
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 2.4e-31 141.4 328 30.2
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.4e-31 141.4 375 28.5
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 3.2e-31 141.0 350 29.4
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 3.2e-31 141.0 388 28.6
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 4.2e-31 140.6 369 29.8
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 4.2e-31 140.6 349 28.7
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 5.4e-31 140.2 374 28.9
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 5.4e-31 140.2 362 28.2
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.6e-30 138.7 369 29.5
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.1e-30 138.3 356 29.5
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.1e-30 138.3 331 28.7
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.7e-30 137.9 370 28.4
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 3.5e-30 137.5 370 30.0
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 4.6e-30 137.1 369 29.0
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 6.0e-30 136.7 329 30.7
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.0e-30 136.7 368 29.3
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 7.8e-30 136.3 373 28.2
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 1.0e-29 136.0 374 27.8
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 3.9e-29 134.0 378 27.5
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 5.1e-29 133.7 368 27.7
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 4.3e-28 130.6 358 27.1
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 3.6e-27 127.5 301 30.9
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 8.1e-27 126.3 314 28.0
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 6.9e-26 123.2 309 27.5
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 9.0e-26 122.9 311 28.9
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 3.4e-25 120.9 422 25.6
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 9.9e-25 119.4 364 25.5
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.7e-24 118.6 242 29.3
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 2.9e-24 117.9 326 26.7
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 1.2e-22 112.5 283 28.3
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 1.2e-22 112.5 182 36.8
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 2.1e-22 111.7 217 34.1
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 4.6e-22 110.5 226 33.6
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.3e-21 109.0 168 38.1
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 1.3e-21 109.0 228 33.3
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.3e-21 109.0 225 32.9
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 2.3e-21 108.2 155 38.7
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 4.3e-20 104.0 248 29.8
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.6e-17 94.7 364 24.7
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 2.4e-15 88.2 361 23.3
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 7.4e-12 76.6 216 23.6
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 8.1e-11 73.2 124 33.9
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 4.9e-08 63.9 109 33.9
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.1e-06 58.5 212 25.9
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 3.5e-06 57.8 152 30.9
VMungo1309G2854 Vigna mungo HOM05D000344 ORTHO05D000934 4.6e-06 57.4 97 33.0


User provided reference genes

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