Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.2e-198 696.4 388 100.0
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 2.1e-113 413.3 348 66.7
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 8.1e-110 401.4 333 65.8
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 1.3e-96 357.5 337 62.6
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.5e-95 354.0 330 61.5
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.5e-95 354.0 330 61.5
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.5e-95 354.0 351 58.4
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 2.5e-95 353.2 330 61.5
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.5e-95 353.2 330 61.2
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.5e-95 353.2 330 61.5
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 3.3e-95 352.8 330 61.2
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 3.3e-95 352.8 330 61.5
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.3e-95 352.8 332 61.4
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 5.6e-95 352.1 330 61.2
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 5.6e-95 352.1 330 61.2
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 7.3e-95 351.7 356 58.1
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 7.3e-95 351.7 352 58.5
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 9.6e-95 351.3 363 56.7
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-94 350.5 330 60.6
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.6e-94 350.5 350 59.7
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 1.6e-94 350.5 330 60.9
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 2.1e-94 350.1 330 61.2
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 2.1e-94 350.1 330 60.9
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.8e-94 349.7 330 60.6
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 2.8e-94 349.7 346 59.2
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 3.6e-94 349.4 327 62.1
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 4.8e-94 349.0 333 60.7
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 6.2e-94 348.6 322 61.2
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 6.2e-94 348.6 346 59.0
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 6.2e-94 348.6 358 56.1
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 8.1e-94 348.2 346 58.7
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 8.1e-94 348.2 326 62.3
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 8.1e-94 348.2 326 62.3
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-93 347.8 346 58.7
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 1.1e-93 347.8 346 58.7
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.1e-93 347.8 355 59.4
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.1e-93 347.8 330 60.6
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 1.1e-93 347.8 345 58.6
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.8e-93 347.1 326 62.0
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 1.8e-93 347.1 346 58.4
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 1.8e-93 347.1 346 58.4
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.8e-93 347.1 326 62.0
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.1e-93 346.3 330 60.3
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 5.3e-93 345.5 322 61.2
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 6.9e-93 345.1 350 59.1
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 9.0e-93 344.7 350 58.9
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.5e-92 344.0 350 58.0
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 1.5e-92 344.0 333 60.7
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 2.0e-92 343.6 350 58.6
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.0e-92 343.6 348 56.6
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 2.0e-92 343.6 331 61.3
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 2.0e-92 343.6 379 54.6
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 2.0e-92 343.6 343 59.8
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 2.6e-92 343.2 338 59.2
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 2.6e-92 343.2 353 56.9
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 4.5e-92 342.4 343 58.6
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 4.5e-92 342.4 348 57.2
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 4.5e-92 342.4 323 60.7
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.8e-92 342.0 344 58.1
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 5.8e-92 342.0 325 59.7
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 5.8e-92 342.0 325 60.6
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 7.6e-92 341.7 328 59.5
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 7.6e-92 341.7 330 61.2
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 7.6e-92 341.7 352 59.1
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 9.9e-92 341.3 326 61.7
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.3e-91 340.9 327 59.3
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.7e-91 340.5 324 60.2
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.7e-91 340.5 352 58.8
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 2.2e-91 340.1 346 55.2
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.2e-91 340.1 325 60.9
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.9e-91 339.7 336 58.9
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 2.9e-91 339.7 326 59.5
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 3.8e-91 339.3 323 61.0
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 3.8e-91 339.3 345 58.3
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 4.9e-91 339.0 355 58.0
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 6.4e-91 338.6 313 62.3
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 6.4e-91 338.6 380 54.7
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 6.4e-91 338.6 329 59.6
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 8.4e-91 338.2 352 57.4
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.1e-90 337.8 349 57.9
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.1e-90 337.8 323 59.8
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.9e-90 337.0 335 60.0
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 2.4e-90 336.7 338 60.4
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.4e-90 336.7 348 58.0
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 3.2e-90 336.3 327 60.2
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 4.2e-90 335.9 349 59.3
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 4.2e-90 335.9 352 58.0
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 5.4e-90 335.5 371 54.7
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 5.4e-90 335.5 336 58.3
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 7.1e-90 335.1 322 61.2
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 7.1e-90 335.1 324 59.0
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 9.3e-90 334.7 363 57.3
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 9.3e-90 334.7 326 59.8
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.2e-89 334.3 341 59.2
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.2e-89 334.3 348 57.5
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 1.2e-89 334.3 352 57.7
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.2e-89 334.3 330 57.9
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.6e-89 334.0 328 60.4
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.6e-89 334.0 355 57.7
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 2.1e-89 333.6 325 60.0
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.0e-88 331.3 322 58.1
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 1.0e-88 331.3 319 61.1
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.8e-88 330.5 325 60.9
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.8e-88 330.5 330 59.4
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 2.3e-88 330.1 345 58.8
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 2.3e-88 330.1 325 57.2
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 5.1e-88 328.9 339 57.8
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 8.7e-88 328.2 345 58.6
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.1e-87 327.8 316 60.4
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.9e-87 327.0 352 52.3
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.5e-87 326.6 309 61.2
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 7.4e-87 325.1 352 55.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 9.6e-87 324.7 309 61.2
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 2.1e-86 323.6 348 55.7
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 5.8e-84 315.5 357 54.1
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.3e-83 314.3 168 98.2
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 1.1e-82 311.2 332 54.5
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 2.5e-82 310.1 347 53.0
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 1.0e-80 304.7 301 58.5
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.8e-80 303.9 301 58.5
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 5.1e-80 302.4 301 57.8
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 6.2e-78 295.4 313 52.1
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.0e-75 288.1 333 55.3
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.9e-75 285.8 321 53.0
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.2e-73 281.2 274 59.9
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 4.8e-70 269.2 324 53.7
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 6.3e-70 268.9 346 52.9
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.5e-66 256.9 233 60.1
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 3.0e-64 250.0 237 62.9
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 6.7e-64 248.8 297 47.1
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 5.7e-63 245.7 322 46.9
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.8e-62 243.4 243 61.3
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.4e-61 241.1 243 59.3
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 4.2e-58 229.6 203 58.1
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 3.6e-57 226.5 352 46.6
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 8.2e-54 215.3 314 43.9
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 6.7e-48 195.7 208 52.4
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 2.0e-39 167.5 206 49.0
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 8.6e-27 125.6 128 53.1
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 9.5e-26 122.1 144 57.6
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 8.0e-25 119.0 97 58.8
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 3.7e-22 110.2 93 58.1
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 1.8e-21 107.8 94 57.4
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 8.6e-19 99.0 105 51.4
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 8.6e-19 99.0 129 45.7
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.1e-18 98.6 92 58.7
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 1.2e-17 95.1 76 56.6
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.8e-16 91.3 75 56.0
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 4.4e-15 86.7 128 40.6
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 7.5e-15 85.9 78 57.7
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 4.9e-14 83.2 117 39.3
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-12 77.8 71 52.1
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.9e-10 71.2 268 29.9
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 5.6e-10 69.7 63 55.6
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 9.5e-10 68.9 167 36.5
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.8e-09 67.4 47 68.1
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 4.7e-09 66.6 51 64.7
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.2e-07 62.0 103 41.7
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 3.4e-07 60.5 54 57.4
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.7e-06 58.2 72 44.4
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.2e-06 57.8 43 62.8
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.9e-06 57.4 49 55.1


User provided reference genes

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