Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 1.1e-234 816.2 388 100.0
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.3e-128 463.8 304 68.8
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.3e-128 463.8 305 69.8
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 1.7e-128 463.4 306 69.0
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.1e-127 460.7 306 66.3
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 7.3e-127 458.0 305 67.5
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 9.5e-127 457.6 305 67.9
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 1.6e-126 456.8 317 65.9
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 6.2e-126 454.9 306 65.0
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 8.0e-126 454.5 307 67.1
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 1.4e-125 453.8 305 67.9
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 1.8e-125 453.4 305 67.9
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 3.1e-125 452.6 306 65.7
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 8.9e-125 451.1 302 66.9
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 1.2e-124 450.7 305 67.5
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.2e-124 450.7 312 63.8
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 1.2e-124 450.7 302 66.6
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 2.0e-124 449.9 306 65.4
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 2.6e-124 449.5 314 65.0
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 3.4e-124 449.1 306 66.0
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 3.4e-124 449.1 305 67.5
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 3.4e-124 449.1 306 65.7
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 3.4e-124 449.1 302 66.9
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 4.4e-124 448.7 307 66.4
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 5.8e-124 448.4 304 67.4
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 5.8e-124 448.4 305 66.2
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 9.8e-124 447.6 305 67.2
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 9.8e-124 447.6 305 67.2
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 1.3e-123 447.2 312 65.1
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 1.7e-123 446.8 306 67.0
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 2.2e-123 446.4 305 67.2
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 2.9e-123 446.0 306 65.0
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 3.7e-123 445.7 305 67.2
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 3.7e-123 445.7 305 65.9
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 4.9e-123 445.3 305 66.9
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 4.9e-123 445.3 306 67.0
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 6.4e-123 444.9 302 65.2
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 6.4e-123 444.9 302 65.2
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 6.4e-123 444.9 302 66.6
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 1.4e-122 443.7 308 65.3
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.4e-122 443.7 306 66.0
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 1.4e-122 443.7 306 65.0
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 1.9e-122 443.4 302 65.9
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.9e-122 443.4 306 65.0
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 1.9e-122 443.4 302 64.6
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 1.9e-122 443.4 291 67.4
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 2.4e-122 443.0 303 65.3
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 2.4e-122 443.0 306 64.1
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 2.4e-122 443.0 303 66.3
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 3.2e-122 442.6 306 65.0
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 3.2e-122 442.6 302 66.6
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.1e-122 442.2 306 64.4
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 7.0e-122 441.4 306 64.7
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 9.2e-122 441.0 314 64.0
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 9.2e-122 441.0 312 65.4
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 9.2e-122 441.0 306 65.4
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 9.2e-122 441.0 303 66.7
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 1.2e-121 440.7 302 66.2
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 1.2e-121 440.7 306 66.0
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.6e-121 440.3 315 63.8
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 2.1e-121 439.9 306 65.4
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 2.1e-121 439.9 307 64.8
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 2.1e-121 439.9 305 64.6
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 2.7e-121 439.5 307 63.8
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 6.0e-121 438.3 306 66.3
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 7.8e-121 438.0 305 65.2
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 1.3e-120 437.2 307 64.8
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 2.3e-120 436.4 307 64.2
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 2.3e-120 436.4 326 62.3
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 2.3e-120 436.4 306 65.7
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 2.3e-120 436.4 302 63.2
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 3.0e-120 436.0 306 65.0
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 3.0e-120 436.0 302 63.2
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 3.0e-120 436.0 306 63.1
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.0e-120 436.0 306 63.1
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 3.9e-120 435.6 311 62.1
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.1e-120 435.3 306 62.7
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 5.1e-120 435.3 305 64.6
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 6.6e-120 434.9 306 64.1
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 8.6e-120 434.5 305 63.3
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 8.6e-120 434.5 305 64.6
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 8.6e-120 434.5 302 64.9
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.1e-119 434.1 306 62.4
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 1.5e-119 433.7 306 64.7
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.5e-119 433.7 309 63.1
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 2.5e-119 433.0 305 64.3
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 2.5e-119 433.0 306 65.0
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 3.3e-119 432.6 306 62.7
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 2.8e-118 429.5 306 64.1
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 3.6e-118 429.1 305 63.6
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 4.7e-118 428.7 304 64.5
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 4.7e-118 428.7 306 63.4
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 6.2e-118 428.3 346 58.7
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 1.1e-117 427.6 306 64.1
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 2.3e-117 426.4 307 64.2
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 2.3e-117 426.4 307 64.2
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 2.3e-117 426.4 306 65.4
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 2.3e-117 426.4 306 62.7
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.1e-117 426.0 306 65.0
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 5.2e-117 425.2 305 63.0
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 1.1e-114 417.5 306 62.4
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 1.7e-112 410.2 302 62.9
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 2.3e-112 409.8 304 61.8
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 1.9e-111 406.8 287 64.1
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 3.3e-111 406.0 317 60.9
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 1.2e-108 397.5 288 62.5
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.7e-107 393.7 307 58.3
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.9e-106 390.2 309 58.9
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 5.4e-106 388.7 308 55.5
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.9e-103 380.2 302 60.3
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.1e-101 374.4 303 59.7
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 2.4e-101 373.2 307 57.3
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 4.0e-101 372.5 305 58.7
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 5.4e-98 362.1 305 56.1
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.8e-94 349.7 306 53.3
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 3.4e-92 342.8 327 52.6
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 3.4e-92 342.8 327 52.6
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 9.9e-92 341.3 233 64.4
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.9e-88 329.3 435 40.9
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 6.9e-85 318.5 239 62.3
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 3.0e-80 303.1 204 68.1
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 5.3e-77 292.4 198 65.2
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.2e-76 291.2 249 55.8
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 8.4e-75 285.0 189 65.1
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 3.5e-73 279.6 308 45.1
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 7.4e-71 271.9 175 65.7
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 5.5e-66 255.8 167 67.1
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 9.4e-66 255.0 178 62.4
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.6e-55 220.3 302 44.4
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 6.5e-43 179.1 216 42.1
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 6.1e-33 146.0 86 70.9
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 8.8e-32 142.1 107 63.6
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 4.4e-31 139.8 99 60.6
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.9e-28 129.4 97 60.8
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.8e-24 117.9 91 58.2
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 3.0e-24 117.1 321 28.3
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.0e-21 105.9 73 61.6
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 1.2e-20 105.1 321 28.7
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 3.5e-20 103.6 84 53.6
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 7.3e-18 95.9 73 64.4
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 4.1e-13 80.1 104 47.1
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.8e-08 64.7 54 59.3
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 5.2e-08 63.2 179 26.8
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 5.8e-07 59.7 38 63.2
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.9e-06 57.4 49 49.0


User provided reference genes

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