Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 9.6e-86 320.1 158 100.0
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.1e-76 288.5 174 86.8
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.2e-51 206.8 157 63.7
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 4.5e-51 204.9 157 63.1
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 5.9e-51 204.5 157 63.1
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 7.7e-51 204.1 157 62.4
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 7.7e-51 204.1 162 62.3
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 1.3e-50 203.4 157 62.4
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 1.3e-50 203.4 157 62.4
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 1.3e-50 203.4 157 62.4
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 8.5e-50 200.7 157 61.8
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 8.5e-50 200.7 156 60.9
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 2.5e-49 199.1 157 65.0
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.5e-49 199.1 159 61.6
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 2.5e-49 199.1 157 61.1
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 3.2e-49 198.7 165 60.0
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.6e-48 196.4 154 62.3
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.6e-48 196.4 157 61.1
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 2.1e-48 196.1 161 60.2
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 3.6e-48 195.3 171 57.3
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.7e-48 194.9 156 62.8
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 8.0e-48 194.1 157 60.5
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.0e-47 193.7 156 60.3
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.0e-47 193.7 163 57.7
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 3.0e-47 192.2 154 60.4
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 4.0e-47 191.8 156 59.6
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 4.0e-47 191.8 167 58.7
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 4.0e-47 191.8 156 60.9
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 8.8e-47 190.7 156 60.3
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.2e-46 190.3 153 60.1
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.2e-46 190.3 158 59.5
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.2e-46 190.3 170 56.5
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.0e-46 189.5 156 59.6
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 2.6e-46 189.1 154 59.1
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 2.6e-46 189.1 158 58.9
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 2.6e-46 189.1 156 59.0
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 3.4e-46 188.7 153 60.8
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 4.4e-46 188.3 156 57.7
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 5.7e-46 188.0 156 59.6
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 7.5e-46 187.6 181 54.1
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.3e-45 186.8 170 54.7
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.7e-45 186.4 159 57.2
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.7e-45 186.4 156 57.7
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 2.2e-45 186.0 160 58.1
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 2.2e-45 186.0 154 58.4
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.2e-45 186.0 155 58.7
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 2.8e-45 185.7 156 58.3
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 3.7e-45 185.3 160 56.9
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 6.3e-45 184.5 156 57.7
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 6.3e-45 184.5 177 52.5
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 8.3e-45 184.1 157 58.6
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 2.4e-44 182.6 178 53.9
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 3.1e-44 182.2 156 58.3
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 4.1e-44 181.8 173 53.8
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 4.1e-44 181.8 161 57.1
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 4.1e-44 181.8 156 57.7
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 5.4e-44 181.4 171 53.8
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 9.1e-44 180.6 175 52.6
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.2e-43 180.3 175 52.6
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 2.0e-43 179.5 156 57.7
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.5e-43 178.7 158 56.3
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 3.5e-43 178.7 158 57.0
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 5.9e-43 177.9 187 49.7
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.0e-42 177.2 155 56.8
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.3e-42 176.8 209 45.9
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 2.2e-42 176.0 200 47.0
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 3.8e-42 175.3 156 55.8
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 5.0e-42 174.9 197 47.7
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 5.0e-42 174.9 155 56.1
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 6.5e-42 174.5 156 53.2
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.5e-41 172.6 154 54.5
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 7.2e-41 171.0 156 57.1
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 1.6e-40 169.9 156 55.8
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 4.7e-40 168.3 154 55.2
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 4.7e-40 168.3 155 56.8
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 8.0e-40 167.5 160 53.1
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.0e-39 167.2 167 54.5
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.4e-39 166.8 156 51.3
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 3.0e-39 165.6 147 57.8
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 6.8e-39 164.5 125 65.6
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 8.8e-39 164.1 150 56.7
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 2.6e-38 162.5 156 50.6
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 7.5e-38 161.0 163 49.1
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 7.5e-38 161.0 114 65.8
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 9.8e-38 160.6 113 65.5
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 9.8e-38 160.6 153 51.6
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.7e-37 159.8 123 61.8
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.9e-37 158.3 156 51.3
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 6.3e-37 157.9 113 64.6
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 6.3e-37 157.9 112 67.0
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 8.3e-37 157.5 122 60.7
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 8.3e-37 157.5 151 51.7
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 8.3e-37 157.5 112 63.4
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.8e-36 156.4 114 63.2
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.4e-36 156.0 156 51.3
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 2.4e-36 156.0 156 51.9
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 2.4e-36 156.0 134 56.7
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 3.1e-36 155.6 151 52.3
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 4.1e-36 155.2 128 60.2
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 9.2e-36 154.1 155 48.4
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.2e-35 153.7 113 63.7
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.2e-35 153.7 108 65.7
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 2.7e-35 152.5 117 62.4
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 2.7e-35 152.5 151 51.0
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 3.5e-35 152.1 111 64.9
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 3.5e-35 152.1 126 61.9
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 5.9e-35 151.4 151 50.3
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.0e-34 150.6 152 50.0
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 1.0e-34 150.6 112 65.2
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.3e-34 150.2 115 61.7
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.3e-34 149.4 115 60.9
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 2.9e-34 149.1 115 62.6
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 3.8e-34 148.7 112 62.5
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 3.8e-34 148.7 163 47.2
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 1.9e-33 146.4 156 50.0
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 3.3e-33 145.6 113 61.9
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 9.5e-33 144.1 156 50.0
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 4.0e-31 138.7 158 49.4
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 5.7e-30 134.8 155 45.8
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.7e-29 133.3 118 52.5
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.7e-29 133.3 151 45.0
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.1e-28 130.6 136 46.3
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 5.4e-28 128.3 105 56.2
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 9.2e-28 127.5 156 46.2
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.7e-27 125.9 77 74.0
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 4.6e-27 125.2 98 57.1
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.7e-24 115.2 155 43.9
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 5.8e-22 108.2 158 42.4
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.7e-21 106.7 158 40.5
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.9e-21 105.9 110 50.0
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.1e-20 104.0 72 66.7
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.2e-19 100.5 70 65.7
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 7.8e-19 97.8 116 48.3
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.0e-18 97.4 70 62.9
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.7e-18 96.7 153 39.2
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 5.0e-18 95.1 71 56.3
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.5e-17 93.6 101 50.5
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 1.9e-17 93.2 69 63.8
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.9e-17 93.2 71 59.2
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 1.2e-16 90.5 91 52.7
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 1.4e-15 87.0 156 35.3
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.3e-15 86.3 156 33.3
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.2e-14 84.0 72 55.6
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 8.3e-13 77.8 86 46.5
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.9e-09 66.6 120 35.0
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 4.3e-09 65.5 118 34.7
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.6e-08 62.4 47 51.1
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 1.2e-06 57.4 83 37.3
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 4.4e-06 55.5 51 51.0
Mapoly0107s0014 Marchantia polymorpha HOM05D004274 ORTHO05D004980 5.8e-06 55.1 35 65.7


User provided reference genes

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