Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 5.3e-256 887.1 424 100.0
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.4e-142 510.4 426 55.9
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.0e-142 509.2 426 55.4
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.0e-142 509.2 426 55.4
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 6.7e-142 508.1 426 55.2
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.9e-141 506.5 426 54.9
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.5e-141 506.1 426 55.2
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.3e-141 505.4 426 55.2
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 7.4e-141 504.6 426 54.0
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 7.4e-141 504.6 426 55.6
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.4e-141 504.6 426 55.2
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 7.4e-141 504.6 426 55.4
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.2e-140 503.1 426 54.7
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.8e-140 501.9 426 54.7
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 8.2e-140 501.1 426 53.5
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.8e-139 500.0 422 54.0
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.5e-138 496.9 426 54.2
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.5e-138 496.9 426 54.0
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 4.5e-138 495.4 426 54.9
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 5.9e-138 495.0 426 53.8
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-137 493.0 426 53.8
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 3.8e-137 492.3 426 52.8
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 6.5e-137 491.5 429 52.7
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 7.2e-136 488.0 424 52.6
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 6.1e-135 485.0 426 53.1
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 7.9e-135 484.6 424 54.0
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.0e-134 484.2 426 52.1
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.0e-134 482.6 441 51.7
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 6.7e-134 481.5 425 52.2
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 2.0e-133 479.9 430 52.1
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 3.3e-133 479.2 431 53.1
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 4.4e-133 478.8 447 50.6
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 7.4e-133 478.0 422 52.4
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 9.7e-133 477.6 428 52.3
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.3e-132 477.2 423 52.7
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.3e-132 477.2 426 52.8
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.2e-132 476.5 426 52.8
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.2e-132 476.5 425 52.2
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.8e-132 476.1 426 53.5
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 3.7e-132 475.7 427 52.2
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.8e-132 475.3 427 52.5
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 4.8e-132 475.3 424 51.4
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 4.8e-132 475.3 426 51.4
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 8.2e-132 474.6 429 51.7
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.1e-131 474.2 427 52.2
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.8e-131 473.4 425 52.9
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 3.1e-131 472.6 427 52.2
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 3.1e-131 472.6 424 51.2
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.1e-131 472.2 426 51.9
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 7.0e-131 471.5 426 52.3
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 7.0e-131 471.5 424 51.4
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 9.1e-131 471.1 431 51.3
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.5e-130 470.3 429 51.0
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.5e-130 470.3 422 51.4
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.5e-130 470.3 426 52.6
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.0e-130 469.9 426 51.9
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.4e-130 469.2 423 51.8
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 4.5e-130 468.8 426 51.4
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 5.9e-130 468.4 425 52.0
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 7.7e-130 468.0 425 51.3
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.0e-129 467.6 425 52.5
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.0e-129 467.6 428 51.2
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.0e-129 467.6 426 52.3
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.3e-129 467.2 430 51.2
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.7e-129 466.8 428 51.2
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 2.2e-129 466.5 427 51.1
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 2.2e-129 466.5 427 51.3
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 3.8e-129 465.7 461 49.7
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.0e-129 465.3 437 50.8
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 8.5e-129 464.5 426 50.7
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.1e-128 464.2 426 51.2
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.4e-128 463.8 426 50.9
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 2.5e-128 463.0 423 50.8
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.2e-128 462.6 426 50.9
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 4.2e-128 462.2 429 51.7
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 4.2e-128 462.2 417 51.8
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 4.2e-128 462.2 424 50.9
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 5.5e-128 461.8 427 50.6
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 5.5e-128 461.8 428 51.6
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.6e-127 460.3 456 48.0
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.6e-127 460.3 452 48.7
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 2.7e-127 459.5 428 50.7
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.4e-126 457.2 428 50.7
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.4e-126 457.2 427 50.8
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.3e-126 456.4 429 49.9
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 3.0e-126 456.1 476 46.0
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 5.2e-126 455.3 426 49.1
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-125 453.8 449 49.2
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.0e-125 453.4 427 50.4
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.3e-125 452.6 466 48.5
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.4e-125 452.2 426 49.8
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 4.4e-125 452.2 429 47.8
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 9.7e-125 451.1 361 55.7
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.2e-124 449.9 442 50.0
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.8e-124 448.7 426 49.5
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.8e-124 448.7 426 49.5
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 4.8e-124 448.7 426 48.8
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.1e-123 447.6 423 49.9
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.6e-122 443.0 425 49.4
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 3.5e-122 442.6 429 48.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 5.9e-122 441.8 426 49.3
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.7e-121 440.3 366 55.5
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 2.9e-121 439.5 422 50.0
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.8e-118 430.3 431 50.1
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.8e-118 430.3 369 53.4
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 6.7e-118 428.3 432 48.4
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.7e-116 423.7 369 54.2
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.2e-116 423.3 432 48.6
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.8e-116 422.9 425 47.5
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.0e-114 416.8 428 48.8
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-113 413.7 425 48.7
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.5e-112 409.8 547 40.4
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 2.5e-112 409.8 335 54.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.5e-112 408.7 425 46.6
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 5.2e-110 402.1 369 51.5
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.5e-109 400.6 374 50.5
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 4.4e-109 399.1 307 59.6
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 7.5e-109 398.3 306 60.1
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 2.8e-108 396.4 425 47.1
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.4e-107 393.3 341 53.7
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.9e-106 388.7 316 56.3
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.3e-105 387.5 427 45.4
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.7e-105 387.1 378 49.5
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 2.1e-103 380.2 424 46.7
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.6e-103 379.4 316 55.7
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.2e-100 370.2 393 47.6
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 3.7e-100 369.4 342 51.5
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.7e-98 363.2 290 56.6
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.8e-94 350.5 365 46.8
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.0e-93 347.1 429 42.4
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 7.3e-88 328.6 425 41.2
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.8e-87 326.6 311 49.8
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 2.2e-84 317.0 364 42.9
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 7.0e-83 312.0 292 52.4
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 3.6e-79 299.7 267 54.7
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.2e-77 294.7 261 54.8
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 3.4e-77 293.1 286 50.7
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 3.4e-77 293.1 293 48.1
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.4e-75 287.7 282 48.9
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.5e-72 277.7 269 51.3
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 3.8e-68 263.1 267 49.4
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 7.1e-67 258.8 214 56.5
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 2.8e-47 193.7 150 56.0
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.7e-44 184.5 146 54.1
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.1e-40 171.8 148 54.7
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.4e-38 164.9 207 43.0
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.5e-37 159.8 231 40.3
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 2.1e-34 151.0 115 55.7
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.3e-30 136.3 129 50.4
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 2.6e-29 134.0 99 60.6
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 2.6e-29 134.0 99 60.6
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 2.6e-29 134.0 99 60.6
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 4.5e-29 133.3 225 35.6
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.4e-25 121.7 156 35.9
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 3.9e-25 120.2 156 37.8
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-10 72.0 70 47.1
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.8e-09 68.2 133 29.3
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.0e-09 67.4 157 30.6
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.5e-08 65.1 46 58.7
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-07 62.0 59 52.5


User provided reference genes

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