Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.2e-100 369.8 180 100.0
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.8e-27 126.7 122 53.3
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.6e-26 122.9 141 47.5
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 9.8e-26 120.9 132 46.2
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.4e-24 117.1 144 38.2
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.1e-24 115.9 140 40.0
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 5.4e-24 115.2 144 38.2
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 7.0e-24 114.8 150 38.0
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 7.0e-24 114.8 137 39.4
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.6e-23 113.6 127 40.9
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 2.7e-23 112.8 141 39.0
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 3.5e-23 112.5 152 37.5
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 3.5e-23 112.5 98 46.9
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 4.5e-23 112.1 88 53.4
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 5.9e-23 111.7 136 40.4
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 5.9e-23 111.7 140 38.6
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 5.9e-23 111.7 139 38.1
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 5.9e-23 111.7 150 36.0
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 7.8e-23 111.3 144 38.2
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 7.8e-23 111.3 132 39.4
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 7.8e-23 111.3 132 39.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.0e-22 110.9 139 37.4
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.3e-22 110.5 148 37.2
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.3e-22 110.5 140 37.9
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-22 110.5 138 38.4
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.3e-22 110.5 136 38.2
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 1.3e-22 110.5 98 45.9
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.7e-22 110.2 133 40.6
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.7e-22 110.2 88 52.3
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.7e-22 110.2 139 40.3
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.9e-22 109.4 137 38.7
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 2.9e-22 109.4 140 40.7
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 3.8e-22 109.0 139 36.7
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 3.8e-22 109.0 87 48.3
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 3.8e-22 109.0 84 51.2
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 3.8e-22 109.0 84 52.4
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.8e-22 109.0 95 49.5
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 5.0e-22 108.6 130 41.5
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 5.0e-22 108.6 133 39.8
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 5.0e-22 108.6 88 51.1
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 5.0e-22 108.6 90 48.9
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 5.0e-22 108.6 86 52.3
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 6.6e-22 108.2 133 39.8
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 6.6e-22 108.2 105 46.7
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 6.6e-22 108.2 93 47.3
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 6.6e-22 108.2 144 37.5
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 6.6e-22 108.2 88 50.0
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 6.6e-22 108.2 86 57.0
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 6.6e-22 108.2 90 48.9
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 8.6e-22 107.8 133 39.8
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.1e-21 107.5 91 48.4
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.1e-21 107.5 134 40.3
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.1e-21 107.5 86 52.3
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.1e-21 107.5 88 48.9
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.1e-21 107.5 138 37.0
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.1e-21 107.5 88 48.9
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.1e-21 107.5 88 50.0
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.1e-21 107.5 88 47.7
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.1e-21 107.5 88 47.7
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.1e-21 107.5 84 52.4
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.1e-21 107.5 146 37.7
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 1.1e-21 107.5 146 37.7
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.1e-21 107.5 126 41.3
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.1e-21 107.5 90 47.8
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.1e-21 107.5 94 48.9
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.1e-21 107.5 94 47.9
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-21 107.1 132 40.2
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.5e-21 107.1 132 40.2
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.5e-21 107.1 95 45.3
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-21 107.1 131 39.7
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.9e-21 106.7 133 39.8
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.9e-21 106.7 135 37.8
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 1.9e-21 106.7 86 48.8
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.9e-21 106.7 86 48.8
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.9e-21 106.7 84 51.2
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 2.5e-21 106.3 84 50.0
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.5e-21 106.3 153 36.6
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.5e-21 106.3 144 36.8
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.5e-21 106.3 133 39.1
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 3.3e-21 105.9 133 39.1
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 3.3e-21 105.9 142 35.9
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 3.3e-21 105.9 84 51.2
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 3.3e-21 105.9 88 50.0
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.3e-21 105.9 88 47.7
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.3e-21 105.9 88 50.0
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 3.3e-21 105.9 84 51.2
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 3.3e-21 105.9 88 47.7
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.3e-21 105.9 84 51.2
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 4.3e-21 105.5 130 38.5
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 4.3e-21 105.5 142 38.7
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.3e-21 105.5 93 48.4
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 5.6e-21 105.1 146 37.0
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 7.3e-21 104.8 85 50.6
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 7.3e-21 104.8 90 48.9
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 7.3e-21 104.8 135 35.6
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 7.3e-21 104.8 83 50.6
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 9.5e-21 104.4 88 47.7
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.5e-21 104.4 84 51.2
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.5e-21 104.4 84 51.2
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.2e-20 104.0 154 36.4
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.2e-20 104.0 86 51.2
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.2e-20 104.0 84 48.8
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.2e-20 104.0 84 48.8
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.6e-20 103.6 84 48.8
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.6e-20 103.6 92 43.5
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.1e-20 103.2 87 48.3
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.1e-20 103.2 87 48.3
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.1e-20 103.2 148 41.2
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 2.1e-20 103.2 126 41.3
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.8e-20 102.8 146 35.6
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 2.8e-20 102.8 88 48.9
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.8e-20 102.8 84 48.8
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 3.6e-20 102.4 86 47.7
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 4.7e-20 102.1 84 48.8
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 6.1e-20 101.7 91 50.5
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 6.1e-20 101.7 136 39.7
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 6.1e-20 101.7 98 44.9
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 8.0e-20 101.3 84 50.0
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.0e-19 100.9 87 44.8
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.0e-19 100.9 89 49.4
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 1.0e-19 100.9 90 45.6
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.0e-19 100.9 133 39.1
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.4e-19 100.5 127 39.4
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.3e-19 99.8 91 46.2
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 2.3e-19 99.8 84 47.6
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 5.2e-19 98.6 92 45.7
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 8.9e-19 97.8 87 48.3
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 8.9e-19 97.8 91 45.1
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.5e-18 97.1 85 45.9
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 5.7e-18 95.1 90 43.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 1.3e-17 94.0 132 37.9
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.7e-17 93.6 139 34.5
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.2e-17 93.2 88 48.9
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 6.4e-17 91.7 62 58.1
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 8.3e-17 91.3 93 46.2
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.8e-16 90.1 81 46.9
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.1e-16 89.0 119 37.8
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 9.2e-16 87.8 133 33.1
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 3.0e-14 82.8 71 46.5
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 2.5e-13 79.7 84 39.3
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 4.3e-13 79.0 90 37.8
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.1e-12 76.6 141 29.8
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 4.1e-08 62.4 37 67.6
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 3.5e-07 59.3 39 59.0
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 4.6e-07 58.9 60 45.0


User provided reference genes

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