Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 7.1e-125 450.7 237 100.0
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 3.7e-57 225.7 225 54.2
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 5.4e-56 221.9 234 50.4
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.8e-52 209.5 226 48.7
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 6.1e-52 208.4 240 47.5
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.8e-51 206.8 226 48.7
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 5.2e-51 205.3 228 47.8
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.5e-50 203.8 236 46.6
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 2.0e-50 203.4 226 47.8
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 4.4e-50 202.2 227 47.1
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 4.4e-50 202.2 229 48.0
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 9.8e-50 201.1 227 48.0
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 9.8e-50 201.1 226 48.2
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 1.7e-49 200.3 226 46.0
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.7e-49 200.3 225 47.1
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.7e-49 200.3 227 46.7
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 2.2e-49 199.9 227 47.1
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 2.2e-49 199.9 231 47.6
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 3.7e-49 199.1 232 45.3
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 3.7e-49 199.1 227 48.5
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 6.3e-49 198.4 225 48.4
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 8.3e-49 198.0 231 47.6
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 1.1e-48 197.6 229 48.0
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 1.1e-48 197.6 224 48.2
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 1.4e-48 197.2 232 46.6
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 1.8e-48 196.8 227 46.7
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 2.4e-48 196.4 229 47.2
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 2.4e-48 196.4 230 47.4
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 2.4e-48 196.4 230 47.4
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 4.1e-48 195.7 230 46.5
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.1e-48 195.7 225 47.6
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 9.2e-48 194.5 226 46.0
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 9.2e-48 194.5 225 46.2
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.2e-47 194.1 230 45.7
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.2e-47 194.1 228 46.9
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 1.2e-47 194.1 230 46.5
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.6e-47 193.7 224 47.8
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.6e-47 193.7 225 47.1
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 1.6e-47 193.7 227 47.1
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.7e-47 193.0 215 47.0
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 2.7e-47 193.0 225 44.4
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 2.7e-47 193.0 229 45.4
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 3.5e-47 192.6 225 45.3
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 3.5e-47 192.6 225 47.6
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.5e-47 192.6 232 46.6
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 3.5e-47 192.6 227 46.7
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 5.9e-47 191.8 225 44.9
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 7.8e-47 191.4 229 43.7
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 7.8e-47 191.4 232 45.7
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 7.8e-47 191.4 225 45.3
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 1.0e-46 191.0 229 44.1
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.0e-46 191.0 226 45.6
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 1.3e-46 190.7 230 45.2
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.7e-46 190.3 229 45.9
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.7e-46 190.3 226 45.6
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.7e-46 190.3 227 45.8
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.7e-46 190.3 230 46.1
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 2.9e-46 189.5 230 45.2
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 2.9e-46 189.5 228 44.3
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 3.9e-46 189.1 229 43.7
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 5.0e-46 188.7 226 45.6
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 5.0e-46 188.7 229 43.2
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 6.6e-46 188.3 230 45.7
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 8.6e-46 188.0 231 45.0
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 8.6e-46 188.0 236 45.3
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 1.9e-45 186.8 228 44.3
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 2.5e-45 186.4 231 44.2
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 2.5e-45 186.4 230 45.2
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 3.3e-45 186.0 229 43.2
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 3.3e-45 186.0 231 44.2
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 3.3e-45 186.0 226 45.6
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 4.3e-45 185.7 230 44.8
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 9.5e-45 184.5 229 44.1
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 1.2e-44 184.1 231 45.5
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.6e-44 183.7 230 42.6
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 2.1e-44 183.3 227 45.4
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 2.8e-44 183.0 229 43.2
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 4.7e-44 182.2 232 43.5
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 5.2e-43 178.7 224 43.8
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.2e-42 177.6 228 44.3
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 3.4e-42 176.0 227 42.3
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.4e-42 175.6 242 43.4
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 9.8e-42 174.5 227 43.6
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.7e-41 173.7 265 40.0
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.9e-41 172.9 221 43.0
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.3e-41 171.4 232 44.4
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 8.3e-41 171.4 188 49.5
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.1e-40 171.0 149 55.0
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.1e-40 171.0 237 43.5
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.4e-40 169.9 232 44.0
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.4e-40 168.7 232 43.1
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.2e-39 167.5 207 44.4
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-39 167.2 232 43.5
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 2.0e-39 166.8 201 43.8
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 7.8e-39 164.9 128 60.9
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.1e-37 161.0 205 44.9
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 7.3e-37 158.3 205 42.0
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 1.2e-36 157.5 220 42.3
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 2.8e-36 156.4 129 55.0
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.4e-35 154.1 126 59.5
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.3e-33 147.5 228 38.6
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.7e-33 147.1 226 40.3
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 6.4e-33 145.2 214 38.3
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.6e-31 140.6 108 62.0
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.0e-26 123.6 103 58.3
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.6e-26 123.2 113 57.5
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.7e-25 120.6 111 55.9
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 5.4e-24 115.5 187 39.0
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 1.2e-23 114.4 84 63.1
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.7e-23 113.2 128 45.3
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 1.3e-22 110.9 84 61.9
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 3.0e-22 109.8 240 32.5
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 3.6e-20 102.8 90 57.8
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.5e-18 97.4 109 51.4
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 7.6e-18 95.1 108 49.1
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 2.9e-17 93.2 66 62.1
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 2.4e-16 90.1 156 36.5
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.6e-15 85.9 56 67.9
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 2.1e-12 77.0 116 39.7
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 8.1e-12 75.1 59 61.0
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 1.4e-11 74.3 52 69.2
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 9.0e-11 71.6 103 41.7
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.1e-08 64.7 105 38.1


User provided reference genes

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