Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0599 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 1.7e-99 365.9 171 100.0
SEGI_05187 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 5.2e-61 238.0 172 65.1
ClCG09G009870 Citrullus lanatus HOM05D007108 ORTHO05D009128 7.5e-60 234.2 172 65.1
Sed0009335 Sechium edule HOM05D007108 ORTHO05D009128 1.3e-59 233.4 172 65.1
CsaV3_7G024840 Cucumis sativus L. HOM05D007108 ORTHO05D009128 2.2e-59 232.6 172 64.5
Gohir.A05G242100 Gossypium hirsutum HOM05D007108 ORTHO05D009128 4.9e-59 231.5 173 64.2
Gohir.D05G243400 Gossypium hirsutum HOM05D007108 ORTHO05D009128 8.3e-59 230.7 176 63.6
AT1G21350 Arabidopsis thaliana HOM05D007108 ORTHO05D009128 1.1e-58 230.3 173 62.4
Sc02g0004350 Simmondsia chinensis HOM05D007108 ORTHO05D009128 1.1e-58 230.3 172 63.4
FvH4_2g14420 Fragaria vesca HOM05D007108 ORTHO05D009128 1.4e-58 229.9 173 60.7
RcHm_v2.0_Chr6g0276751 Rosa chinensis HOM05D007108 ORTHO05D009128 1.4e-58 229.9 173 61.3
Aa31LG7G5350 Aethionema arabicum HOM05D007108 ORTHO05D009128 1.9e-58 229.6 172 62.2
CARHR021740 Cardamine hirsuta HOM05D007108 ORTHO05D009128 1.9e-58 229.6 173 62.4
Lj1g0003350 Lotus japonicus HOM05D007108 ORTHO05D009128 1.9e-58 229.6 173 61.8
Gorai.009G252700 Gossypium raimondii HOM05D007108 ORTHO05D009128 2.4e-58 229.2 173 63.6
MD05G1017900 Malus domestica HOM05D007108 ORTHO05D009128 4.1e-58 228.4 172 62.8
Pp3c23_490 Physcomitrium patens HOM05D007108 ORTHO05D009128 4.1e-58 228.4 181 62.4
Glyma.06G124100 Glycine max HOM05D007108 ORTHO05D009128 5.4e-58 228.0 172 62.8
Peaxi162Scf00263g00613 Petunia axillaris HOM05D007108 ORTHO05D009128 7.1e-58 227.6 172 62.2
Actinidia29517 Actinidia chinensis HOM05D007108 ORTHO05D009128 9.2e-58 227.3 172 63.4
BolC5t30716H Brassica oleracea HOM05D007108 ORTHO05D009128 9.2e-58 227.3 172 61.6
Thhalv10008558m.g Eutrema salsugineum HOM05D007108 ORTHO05D009128 9.2e-58 227.3 172 62.2
BcaC05g26041 Brassica carinata HOM05D007108 ORTHO05D009128 1.2e-57 226.9 172 61.6
Carub.0001s2075 Capsella rubella HOM05D007108 ORTHO05D009128 1.2e-57 226.9 173 61.3
A06p17400 Brassica napus HOM05D007108 ORTHO05D009128 1.6e-57 226.5 172 61.6
BraA06t24837Z Brassica rapa HOM05D007108 ORTHO05D009128 1.6e-57 226.5 172 61.6
Ciclev10002261m.g Citrus clementina HOM05D007108 ORTHO05D009128 1.6e-57 226.5 173 61.3
Eucgr.F02729 Eucalyptus grandis HOM05D007108 ORTHO05D009128 1.6e-57 226.5 173 62.4
Glyma.04G239800 Glycine max HOM05D007108 ORTHO05D009128 1.6e-57 226.5 173 62.4
MSTRG.1369 Avicennia marina HOM05D007108 ORTHO05D009128 3.5e-57 225.3 173 61.3
BcaB07g32123 Brassica carinata HOM05D007108 ORTHO05D009128 3.5e-57 225.3 172 61.0
Potri.002G071000 Populus trichocarpa HOM05D007108 ORTHO05D009128 3.5e-57 225.3 172 62.8
Rhsim07G0025600 Rhododendron simsii HOM05D007108 ORTHO05D009128 4.6e-57 224.9 173 61.8
TPR.G18750 Trifolium pratense HOM05D007108 ORTHO05D009128 4.6e-57 224.9 173 62.4
vmacro13384 Vaccinium macrocarpon HOM05D007108 ORTHO05D009128 4.6e-57 224.9 173 61.3
AL1G34450 Arabidopsis lyrata HOM05D007108 ORTHO05D009128 6.0e-57 224.6 173 61.3
DCAR_010274 Daucus carota HOM05D007108 ORTHO05D009128 6.0e-57 224.6 172 59.9
Medtr3g090490 Medicago truncatula HOM05D007108 ORTHO05D009128 7.8e-57 224.2 173 62.4
Sp1g18900 Schrenkiella parvula HOM05D007108 ORTHO05D009128 7.8e-57 224.2 172 62.2
Thecc.08G146100 Theobroma cacao HOM05D007108 ORTHO05D009128 1.0e-56 223.8 172 61.6
Ca_16662_v3 Cicer arietinum L. HOM05D007108 ORTHO05D009128 1.3e-56 223.4 172 62.8
Lalb_Chr11g0066481 Lupinus albus HOM05D007108 ORTHO05D009128 1.3e-56 223.4 172 61.0
Prupe.8G021900 Prunus persica HOM05D007108 ORTHO05D009128 1.3e-56 223.4 173 60.7
CSS0038886 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 1.7e-56 223.0 176 59.7
CSS0020358 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 2.3e-56 222.6 176 59.1
Phvul.009G136100 Phaseolus vulgaris HOM05D007108 ORTHO05D009128 2.3e-56 222.6 172 61.6
THA.LOC104812052 Tarenaya hassleriana HOM05D007108 ORTHO05D009128 2.3e-56 222.6 173 61.3
VMungo1309G2491 Vigna mungo HOM05D007108 ORTHO05D009128 2.3e-56 222.6 172 61.6
Duzib116G0089 Durio zibethinus HOM05D007108 ORTHO05D009128 3.0e-56 222.2 173 61.3
Sopen04g026870 Solanum pennellii HOM05D007108 ORTHO05D009128 3.9e-56 221.9 172 60.5
TWI34G1539 Tripterygium wilfordii HOM05D007108 ORTHO05D009128 3.9e-56 221.9 173 61.3
QL02p024940 Quercus lobata HOM05D007108 ORTHO05D009128 5.1e-56 221.5 173 60.7
CANSAT25G1119 Cannabis sativa HOM05D007108 ORTHO05D009128 6.6e-56 221.1 173 61.3
Nn5g28655 Nelumbo nucifera HOM05D007108 ORTHO05D009128 6.6e-56 221.1 173 60.7
TAR628G0410 Trochodendron aralioides HOM05D007108 ORTHO05D009128 6.6e-56 221.1 174 62.1
SEGI_12340 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 1.1e-55 220.3 181 56.9
Haze_17721 Corylus avellana HOM05D007108 ORTHO05D009128 1.5e-55 219.9 172 61.0
PSO063G1249 Papaver somniferum HOM05D007108 ORTHO05D009128 1.9e-55 219.5 173 60.7
Cc10_g14220 Coffea canephora HOM05D007108 ORTHO05D009128 2.5e-55 219.2 173 60.1
Aqoxy5G02215 Aquilegia oxysepala HOM05D007108 ORTHO05D009128 3.3e-55 218.8 173 60.1
CAN.G1564.2 Capsicum annuum HOM05D007108 ORTHO05D009128 3.3e-55 218.8 172 60.5
Migut.C01030 Erythranthe guttata HOM05D007108 ORTHO05D009128 3.3e-55 218.8 174 59.8
Atru.chr13.2257 Acer truncatum HOM05D007108 ORTHO05D009128 5.6e-55 218.0 173 60.1
CDE08G0865 Ceratophyllum demersum HOM05D007108 ORTHO05D009128 5.6e-55 218.0 172 61.6
GSVIVG01010051001 Vitis vinifera HOM05D007108 ORTHO05D009128 7.3e-55 217.6 173 60.7
ECA232G2155 Erigeron canadensis HOM05D007108 ORTHO05D009128 1.6e-54 216.5 173 60.1
PSO782G4411 Papaver somniferum HOM05D007108 ORTHO05D009128 1.6e-54 216.5 173 60.1
Solyc04g064930.3 Solanum lycopersicum HOM05D007108 ORTHO05D009128 2.8e-54 215.7 172 59.3
Manes.18G088801 Manihot esculenta HOM05D007108 ORTHO05D009128 6.2e-54 214.5 172 59.9
Pp3c20_22500 Physcomitrium patens HOM05D007108 ORTHO05D009128 6.2e-54 214.5 181 57.5
Os07g0260300 Oryza sativa ssp. japonica HOM05D007108 ORTHO05D009128 1.8e-53 213.0 172 58.1
Lsat_1_v5_gn_9_77661 Lactuca sativa HOM05D007108 ORTHO05D009128 3.1e-53 212.2 172 59.3
HanXRQChr16g0500661 Helianthus annuus HOM05D007108 ORTHO05D009128 5.2e-53 211.5 171 59.1
Oeu000778.2 Olea europaea HOM05D007108 ORTHO05D009128 1.5e-52 209.9 207 51.7
C05p20230 Brassica napus HOM05D007108 ORTHO05D009128 4.4e-52 208.4 145 65.5
CBR_g41654 Chara braunii HOM05D007108 ORTHO05D009128 2.2e-51 206.1 172 57.0
FAN20G1168 Fragaria x ananassa HOM05D007108 ORTHO05D009128 2.2e-51 206.1 141 66.0
Cpa.g.sc49.50 Carica papaya HOM05D007108 ORTHO05D009128 2.9e-51 205.7 145 65.5
ATR1136G010 Amborella trichopoda HOM05D007108 ORTHO05D009128 3.7e-51 205.3 141 66.7
arahy.Tifrunner.gnm1.ann1.3M80B2 Arachis hypogaea HOM05D007108 ORTHO05D009128 3.7e-51 205.3 145 65.5
AagrBONN_evm.TU.Sc2ySwM_117.292 Anthoceros agrestis HOM05D007108 ORTHO05D009128 4.9e-51 204.9 141 67.4
EL10Ac1g01484 Beta vulgaris HOM05D007108 ORTHO05D009128 1.9e-50 203.0 145 66.2
Hma1.2p1_0107F.1_g051540 Hydrangea macrophylla HOM05D007108 ORTHO05D009128 3.2e-50 202.2 165 58.8
COL.COLO4_06005 Corchorus olitorius HOM05D007108 ORTHO05D009128 6.0e-49 198.0 145 64.1
Psat5g082320 Pisum sativum HOM05D007108 ORTHO05D009128 3.9e-48 195.3 149 63.8
arahy.Tifrunner.gnm1.ann1.QUZ9E8 Arachis hypogaea HOM05D007108 ORTHO05D009128 1.2e-46 190.3 173 54.9
SMO228G0194 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 2.1e-46 189.5 151 58.9
Nitab4.5_0000299g0220 Nicotiana tabacum HOM05D007108 ORTHO05D009128 6.2e-46 188.0 172 54.1
CiPaw.16G016700 Carya illinoinensis HOM05D007108 ORTHO05D009128 4.0e-45 185.3 171 52.6
SGA_v2.0_scaffold24G10368 Striga asiatica HOM05D007108 ORTHO05D009128 4.0e-45 185.3 145 62.8
AUR62026764 Chenopodium quinoa HOM05D007108 ORTHO05D009128 1.2e-44 183.7 159 56.0
Dinv41114 Davidia involucrata HOM05D007108 ORTHO05D009128 3.4e-44 182.2 166 55.4
Actinidia01141 Actinidia chinensis HOM05D007108 ORTHO05D009128 1.4e-42 176.8 177 52.0
MELO3C024103.2 Cucumis melo HOM05D007108 ORTHO05D009128 3.2e-42 175.6 113 71.7
Cre17.g715500 Chlamydomonas reinhardtii HOM05D007108 ORTHO05D009128 4.2e-42 175.3 174 51.1
unitig_26.g9907 Utricularia gibba HOM05D007108 ORTHO05D009128 5.4e-42 174.9 170 51.2
AUR62013508 Chenopodium quinoa HOM05D007108 ORTHO05D009128 9.0e-37 157.5 146 54.8
SEGI_19863 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 2.6e-36 156.0 92 73.9
Sabra02G0055700 Salix brachista HOM05D007108 ORTHO05D009128 3.4e-36 155.6 145 55.9
HanXRQChr03g0063741 Helianthus annuus HOM05D007108 ORTHO05D009128 1.9e-31 139.8 102 62.7
Zm00001eb097150 Zea mays HOM05D007108 ORTHO05D009128 1.3e-30 137.1 94 64.9
SMO228G0031 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 1.6e-30 136.7 149 45.6
Nitab4.5_0000427g0030 Nicotiana tabacum HOM05D007108 ORTHO05D009128 1.1e-29 134.0 120 55.8
PSO384G3614 Papaver somniferum HOM05D007108 ORTHO05D009128 4.6e-25 118.6 176 39.2
FAN15G3050 Fragaria x ananassa HOM05D007108 ORTHO05D009128 7.9e-25 117.9 143 44.8
FAN24G1879 Fragaria x ananassa HOM05D007108 ORTHO05D009128 7.9e-25 117.9 143 44.8
Lj7A366T74 Lonicera japonica HOM05D007108 ORTHO05D009128 4.3e-23 112.1 179 36.3
Psat7g065200 Pisum sativum HOM05D007108 ORTHO05D009128 6.9e-13 78.2 51 64.7
Psat2g167120 Pisum sativum HOM05D007108 ORTHO05D003402 2.7e-09 66.2 77 44.2
Ca_16660_v3 Cicer arietinum L. HOM05D006773 ORTHO05D008775 1.0e-08 64.3 153 32.7


User provided reference genes

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