Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 5.3e-132 474.6 273 100.0
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 6.3e-93 344.7 266 73.7
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.1e-92 344.0 266 72.6
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.4e-92 343.6 268 73.1
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 2.4e-92 342.8 264 73.9
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 4.1e-92 342.0 267 72.3
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.1e-92 342.0 269 73.6
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 7.0e-92 341.3 268 73.1
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 7.0e-92 341.3 269 73.6
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 7.0e-92 341.3 268 74.6
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 9.1e-92 340.9 267 72.3
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.6e-91 340.1 269 72.5
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.6e-91 340.1 266 71.4
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.6e-91 340.1 269 73.2
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.6e-91 340.1 269 73.2
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 3.5e-91 339.0 265 72.1
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 4.5e-91 338.6 267 72.7
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 4.5e-91 338.6 267 71.9
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 4.5e-91 338.6 267 72.7
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 4.5e-91 338.6 268 73.1
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 7.7e-91 337.8 266 72.2
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 7.7e-91 337.8 266 72.2
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.0e-90 337.4 268 72.0
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.0e-90 337.4 269 72.9
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.3e-90 337.0 267 71.5
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.3e-90 337.0 268 73.1
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.7e-90 336.7 267 72.3
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.7e-90 336.7 267 71.5
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.7e-90 336.7 268 73.1
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.7e-90 336.7 268 72.4
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 2.2e-90 336.3 268 71.6
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 2.2e-90 336.3 267 71.9
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 3.8e-90 335.5 269 72.5
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 5.0e-90 335.1 270 72.2
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.0e-90 335.1 267 71.2
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 5.0e-90 335.1 267 72.3
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 5.0e-90 335.1 266 70.7
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 6.5e-90 334.7 267 71.5
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 8.5e-90 334.3 268 70.9
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 1.9e-89 333.2 267 70.8
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.9e-89 333.2 266 69.5
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.9e-89 333.2 268 71.6
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.5e-89 332.8 267 71.2
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 3.2e-89 332.4 269 71.0
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 4.2e-89 332.0 266 71.8
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 4.2e-89 332.0 266 72.2
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 5.5e-89 331.6 273 70.0
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 5.5e-89 331.6 268 70.5
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 5.5e-89 331.6 268 71.3
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 5.5e-89 331.6 268 70.5
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 5.5e-89 331.6 268 72.0
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 7.2e-89 331.3 268 69.8
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 7.2e-89 331.3 268 71.3
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 7.2e-89 331.3 268 71.3
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 7.2e-89 331.3 268 70.5
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 7.2e-89 331.3 268 70.5
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 9.4e-89 330.9 268 69.8
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.2e-88 330.5 266 71.4
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.2e-88 330.5 268 71.6
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.2e-88 330.5 267 70.0
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.2e-88 330.5 268 70.9
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.6e-88 330.1 268 71.3
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 2.1e-88 329.7 266 70.7
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 2.7e-88 329.3 266 70.7
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 2.7e-88 329.3 273 69.2
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 3.6e-88 328.9 266 71.1
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 3.6e-88 328.9 266 70.7
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 4.7e-88 328.6 268 72.0
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 6.1e-88 328.2 269 70.3
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.4e-87 327.0 266 70.3
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.4e-87 327.0 266 70.3
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.8e-87 326.6 269 68.4
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 2.3e-87 326.2 265 70.2
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 8.8e-87 324.3 267 71.2
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.2e-86 323.9 273 68.9
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.5e-86 323.6 253 72.3
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 2.6e-86 322.8 257 71.6
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 4.4e-86 322.0 292 65.4
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 5.7e-86 321.6 259 69.5
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 5.7e-86 321.6 274 68.2
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 7.5e-86 321.2 266 67.7
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 4.8e-85 318.5 270 68.1
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 6.3e-85 318.2 254 71.3
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 8.3e-85 317.8 266 69.5
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 8.3e-85 317.8 254 71.3
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.1e-84 317.4 268 67.9
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 7.0e-84 314.7 281 66.9
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.6e-83 313.5 250 70.8
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.6e-83 313.5 268 66.8
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 2.0e-83 313.2 265 69.4
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 2.7e-83 312.8 312 61.5
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.5e-83 312.4 312 59.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 3.5e-83 312.4 264 67.0
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 4.5e-83 312.0 265 68.7
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.0e-82 310.8 307 61.9
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.6e-82 308.1 272 65.4
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 1.9e-81 306.6 269 62.8
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.5e-81 306.2 262 66.4
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 4.2e-81 305.4 253 69.6
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 7.2e-81 304.7 264 62.5
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 8.0e-80 301.2 268 66.4
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 2.0e-78 296.6 314 55.7
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.6e-78 296.2 267 64.0
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 1.7e-77 293.5 259 66.0
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 2.8e-77 292.7 223 71.7
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.8e-76 290.0 346 50.3
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 4.1e-76 288.9 266 59.8
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 4.1e-76 288.9 256 66.0
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 7.0e-76 288.1 290 55.9
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 5.9e-75 285.0 271 59.0
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.9e-73 280.0 225 69.8
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.8e-72 276.2 240 67.5
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.8e-72 276.2 240 67.5
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-70 270.4 323 55.1
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 4.9e-69 265.4 218 72.5
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.1e-68 264.2 217 71.9
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 8.6e-66 254.6 223 66.8
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 4.7e-64 248.8 267 58.8
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 8.0e-64 248.1 266 53.0
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.2e-63 245.4 267 58.4
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 9.2e-60 234.6 312 51.9
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 4.7e-56 222.2 184 67.9
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 6.8e-55 218.4 281 47.7
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 4.9e-53 212.2 252 49.2
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.7e-48 195.7 304 45.7
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 6.8e-47 191.8 180 66.7
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.3e-45 187.6 279 42.3
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 1.3e-45 187.6 149 63.8
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.9e-41 173.7 132 68.9
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.4e-39 166.8 144 70.1
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 3.4e-38 162.9 126 66.7
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 3.0e-34 149.8 100 74.0
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 5.6e-33 145.6 126 61.9
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 3.6e-32 142.9 102 73.5
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 5.8e-30 135.6 91 74.7
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 5.4e-28 129.0 80 78.8
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.4e-23 114.4 150 47.3
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 3.2e-20 103.2 157 43.3
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 5.5e-20 102.4 74 68.9
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.1e-19 100.5 157 43.3
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 6.0e-19 99.0 147 40.1
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.3e-18 97.8 176 38.1
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.0e-18 96.7 68 70.6
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.0e-18 96.7 68 70.6
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 3.9e-18 96.3 152 44.1
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.6e-16 90.9 80 55.0
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.7e-16 89.7 71 80.3
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 4.8e-16 89.4 157 36.9
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 2.4e-15 87.0 267 34.1
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.2e-14 84.7 71 73.2
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.5e-14 82.8 155 35.5
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.2e-13 80.5 160 40.0
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 6.5e-13 79.0 123 42.3
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.2e-12 76.3 156 38.5
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 5.5e-12 75.9 46 73.9
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.2e-11 74.7 57 59.6
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.0e-10 70.1 244 34.8
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.9e-10 69.7 45 73.3
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.7e-09 65.1 46 67.4
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 9.7e-09 65.1 53 62.3
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.4e-07 60.5 87 47.1
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.1e-07 60.1 142 40.8


User provided reference genes

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