Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.1e-136 488.4 242 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.4e-74 282.3 225 61.3
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 7.1e-72 274.6 221 63.3
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 4.6e-71 271.9 220 63.2
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 6.7e-70 268.1 219 63.0
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 8.7e-70 267.7 198 67.7
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 1.5e-69 266.9 223 61.4
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.5e-69 266.9 219 62.6
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.9e-69 266.5 219 62.6
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.5e-69 266.2 198 67.2
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.5e-69 266.2 198 67.2
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 5.6e-69 265.0 223 61.4
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.3e-68 263.8 218 61.5
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 4.8e-68 261.9 223 61.0
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 1.4e-67 260.4 201 64.7
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 2.4e-67 259.6 198 65.2
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 2.4e-67 259.6 216 62.0
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 4.0e-67 258.8 217 62.2
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 5.3e-67 258.5 216 62.0
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 5.3e-67 258.5 199 64.3
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 5.3e-67 258.5 212 64.2
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 9.0e-67 257.7 223 59.6
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 9.0e-67 257.7 203 62.1
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 9.0e-67 257.7 199 64.8
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 1.5e-66 256.9 203 62.6
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 1.5e-66 256.9 198 64.1
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 1.5e-66 256.9 218 61.5
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 2.0e-66 256.5 214 61.2
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 2.0e-66 256.5 216 61.1
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.0e-66 256.5 199 64.8
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 2.6e-66 256.1 214 60.7
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.6e-66 256.1 199 63.3
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 2.6e-66 256.1 215 61.9
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 7.6e-66 254.6 218 60.1
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 7.6e-66 254.6 198 64.1
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 1.0e-65 254.2 199 63.8
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.0e-65 254.2 205 62.9
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.3e-65 253.8 223 59.6
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.3e-65 253.8 218 60.6
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.7e-65 253.4 214 60.3
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 2.2e-65 253.1 199 62.8
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 2.9e-65 252.7 216 61.1
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.9e-65 252.7 216 60.2
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 2.9e-65 252.7 217 61.3
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 2.9e-65 252.7 200 62.0
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 2.9e-65 252.7 216 60.2
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 2.9e-65 252.7 224 58.9
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 3.8e-65 252.3 201 63.7
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 4.9e-65 251.9 223 58.7
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 8.4e-65 251.1 228 59.2
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 8.4e-65 251.1 218 60.6
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.1e-64 250.8 218 60.6
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 1.4e-64 250.4 216 60.6
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.9e-64 250.0 217 59.0
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 1.9e-64 250.0 218 60.6
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 2.5e-64 249.6 199 61.8
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 2.5e-64 249.6 201 62.7
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 3.2e-64 249.2 212 60.4
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 3.2e-64 249.2 199 64.8
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 3.2e-64 249.2 217 60.4
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 4.2e-64 248.8 212 60.4
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 4.2e-64 248.8 216 61.1
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 9.3e-64 247.7 214 59.3
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.6e-63 246.9 214 59.3
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 2.1e-63 246.5 198 62.1
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 2.7e-63 246.1 208 60.6
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 2.7e-63 246.1 218 59.6
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.7e-63 246.1 216 58.8
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 2.7e-63 246.1 214 58.9
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 3.5e-63 245.7 215 60.0
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 3.5e-63 245.7 215 60.0
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 3.5e-63 245.7 216 58.8
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 3.5e-63 245.7 216 58.8
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 3.5e-63 245.7 216 58.3
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 4.6e-63 245.4 216 58.8
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 4.6e-63 245.4 216 58.8
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 7.9e-63 244.6 223 57.8
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.9e-63 244.6 216 58.3
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.0e-62 244.2 216 57.9
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 1.0e-62 244.2 200 62.0
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.3e-62 243.8 199 61.3
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 3.9e-62 242.3 216 58.3
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 3.9e-62 242.3 219 57.5
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 6.7e-62 241.5 199 63.3
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 8.7e-62 241.1 207 59.4
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.1e-61 240.7 199 59.3
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 1.5e-61 240.4 207 59.4
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 3.3e-61 239.2 216 58.3
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 1.3e-60 237.3 215 56.7
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 2.1e-60 236.5 243 52.3
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 3.7e-60 235.7 251 52.2
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.1e-59 232.6 217 55.3
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.1e-59 232.6 217 55.8
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 1.2e-58 230.7 215 55.3
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.2e-58 230.7 202 58.9
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 3.4e-58 229.2 201 57.7
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 7.6e-58 228.0 216 54.6
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 6.5e-57 224.9 210 56.7
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 8.4e-57 224.6 200 56.5
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.1e-56 224.2 215 56.7
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.4e-56 223.8 215 56.3
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 3.2e-56 222.6 214 56.5
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.2e-55 220.7 271 47.6
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.2e-55 220.7 214 55.6
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.6e-55 220.3 217 53.0
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.6e-55 220.3 217 53.0
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 2.1e-55 219.9 200 55.0
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 2.7e-55 219.5 210 55.7
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 2.7e-55 219.5 210 55.7
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 3.5e-55 219.2 217 52.5
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 6.1e-55 218.4 200 54.5
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 3.9e-54 215.7 186 59.7
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 5.1e-54 215.3 219 54.3
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 1.9e-53 213.4 216 54.6
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.0e-50 203.4 180 56.7
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 5.5e-48 195.3 166 61.4
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.5e-42 175.6 232 42.2
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.9e-41 172.9 144 58.3
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 1.4e-40 170.6 125 65.6
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 5.1e-38 162.2 127 60.6
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 5.3e-35 152.1 117 65.0
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 7.2e-32 141.7 109 65.1
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 1.2e-31 141.0 199 40.7
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 1.6e-31 140.6 152 48.0
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 4.7e-31 139.0 124 58.9
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.5e-29 134.0 164 43.9
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.0e-26 123.6 99 59.6
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 2.7e-26 123.2 187 39.6
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 5.9e-26 122.1 190 40.0
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 4.2e-24 115.9 194 38.1
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 5.5e-24 115.5 88 62.5
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 5.5e-24 115.5 190 37.4
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.6e-23 114.0 89 62.9
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 3.6e-23 112.8 124 46.8
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 4.7e-23 112.5 133 51.9
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.0e-22 109.4 93 61.3
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.0e-21 107.1 189 35.4
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 3.4e-21 106.3 194 34.5
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 3.4e-21 106.3 228 33.3
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.8e-20 103.2 187 36.4
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.1e-19 99.4 90 57.8
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.0e-17 94.7 76 64.5
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.2e-17 93.6 170 35.3
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 2.2e-17 93.6 94 48.9
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 3.8e-17 92.8 64 70.3
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 1.0e-14 84.7 66 57.6
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 8.8e-14 81.6 58 63.8
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 2.6e-13 80.1 80 52.5
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 2.8e-12 76.6 57 66.7
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.4e-11 74.3 51 66.7
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 3.1e-11 73.2 71 49.3
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.2e-10 71.2 47 74.5
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.0e-10 70.5 89 42.7
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 6.6e-09 65.5 47 68.1
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 5.6e-08 62.4 47 63.8
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 2.1e-07 60.5 63 50.8
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 6.1e-07 58.9 68 42.6
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 6.8e-06 55.5 58 46.6


User provided reference genes

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