Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 6.6e-173 610.5 292 100.0
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 2.6e-100 369.4 296 60.5
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 4.4e-92 342.0 294 54.4
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 2.4e-90 336.3 293 54.6
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 4.1e-90 335.5 299 54.8
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 7.0e-90 334.7 295 56.3
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.2e-89 334.0 292 54.5
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 2.0e-89 333.2 298 55.0
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 2.7e-89 332.8 295 55.9
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.7e-89 332.8 292 56.8
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.7e-89 332.8 292 56.8
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 2.7e-89 332.8 295 54.6
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 5.9e-89 331.6 292 54.8
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 1.0e-88 330.9 295 54.9
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 1.0e-88 330.9 298 54.7
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 1.3e-88 330.5 295 54.6
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.2e-88 329.7 294 54.4
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 3.8e-88 328.9 292 53.8
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 5.0e-88 328.6 290 54.8
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 6.5e-88 328.2 294 55.4
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 6.5e-88 328.2 290 55.2
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 6.5e-88 328.2 296 54.7
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 1.5e-87 327.0 297 53.2
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 4.2e-87 325.5 290 53.4
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 4.2e-87 325.5 297 53.9
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 5.5e-87 325.1 294 54.1
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 5.5e-87 325.1 295 54.2
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 7.2e-87 324.7 298 52.0
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 1.2e-86 323.9 287 55.1
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 1.6e-86 323.6 296 53.0
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 2.1e-86 323.2 293 53.9
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 2.1e-86 323.2 290 53.1
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 2.1e-86 323.2 298 51.7
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 2.1e-86 323.2 295 53.6
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 3.6e-86 322.4 293 53.9
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 4.7e-86 322.0 294 52.7
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 8.0e-86 321.2 279 54.1
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 1.8e-85 320.1 290 52.8
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.8e-85 320.1 296 53.0
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.3e-85 319.7 295 54.2
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.3e-85 319.7 295 53.9
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 2.3e-85 319.7 286 54.2
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 3.0e-85 319.3 293 52.9
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 3.0e-85 319.3 286 54.5
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 3.0e-85 319.3 297 53.2
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 4.0e-85 318.9 293 53.9
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 4.0e-85 318.9 290 53.8
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 4.0e-85 318.9 290 52.4
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 5.2e-85 318.5 290 53.4
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 6.8e-85 318.2 294 53.7
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 8.8e-85 317.8 294 53.4
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 8.8e-85 317.8 331 49.5
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 1.2e-84 317.4 289 52.9
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.5e-84 317.0 286 53.8
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.5e-84 317.0 294 53.1
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 2.0e-84 316.6 293 53.2
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 2.0e-84 316.6 287 54.0
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 2.6e-84 316.2 291 54.0
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 4.4e-84 315.5 294 52.4
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 5.7e-84 315.1 297 53.5
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 9.8e-84 314.3 291 54.0
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 9.8e-84 314.3 293 52.9
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 1.3e-83 313.9 294 54.1
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 1.7e-83 313.5 295 52.5
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 3.7e-83 312.4 309 51.8
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 6.3e-83 311.6 294 53.7
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 8.3e-83 311.2 293 51.9
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.1e-82 310.8 284 53.5
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.4e-82 310.5 291 50.9
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.8e-82 310.1 286 53.5
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 2.4e-82 309.7 301 52.2
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 3.1e-82 309.3 293 51.2
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 4.1e-82 308.9 286 52.8
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 5.4e-82 308.5 290 52.8
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 5.4e-82 308.5 297 51.2
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 5.4e-82 308.5 293 50.5
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 7.0e-82 308.1 347 47.0
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.2e-81 307.4 286 52.4
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 1.6e-81 307.0 313 50.2
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 1.6e-81 307.0 283 53.4
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 1.6e-81 307.0 294 51.4
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 3.5e-81 305.8 278 53.6
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 3.5e-81 305.8 297 53.2
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 1.3e-80 303.9 290 52.8
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 2.9e-80 302.8 275 54.2
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 8.6e-80 301.2 309 50.5
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 1.5e-79 300.4 295 50.8
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 1.9e-79 300.1 294 50.3
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 4.3e-79 298.9 294 51.0
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 7.3e-79 298.1 287 52.6
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 2.1e-78 296.6 273 54.6
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.8e-78 296.2 292 50.3
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 6.1e-78 295.0 321 48.9
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 1.8e-77 293.5 294 51.0
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 3.0e-77 292.7 268 54.1
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 6.8e-77 291.6 266 54.1
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 1.7e-75 287.0 290 50.0
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 2.2e-75 286.6 288 50.7
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 3.2e-74 282.7 310 48.4
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 3.2e-74 282.7 272 52.2
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.2e-73 280.8 296 45.9
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 4.6e-73 278.9 272 52.2
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 1.1e-71 274.2 286 48.3
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 2.5e-71 273.1 218 60.6
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.3e-71 272.3 315 46.0
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 9.5e-71 271.2 278 51.1
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 8.9e-69 264.6 249 53.0
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 3.4e-68 262.7 287 48.8
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 8.3e-67 258.1 289 43.3
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 5.4e-66 255.4 284 46.8
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 1.9e-63 246.9 298 43.6
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 2.6e-60 236.5 276 44.9
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 1.0e-56 224.6 256 46.1
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.2e-54 217.6 294 41.2
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 5.8e-52 208.8 271 42.4
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 7.6e-52 208.4 314 38.9
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 6.0e-49 198.7 188 53.7
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 5.1e-48 195.7 190 52.1
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 6.9e-37 158.7 127 58.3
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 8.4e-35 151.8 199 43.2
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 9.3e-34 148.3 271 37.6
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 1.1e-23 114.8 88 60.2
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 3.3e-23 113.2 83 56.6
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 1.3e-22 111.3 121 46.3
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.2e-20 104.8 70 65.7
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 2.1e-09 67.4 69 47.8


User provided reference genes

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