Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 4.1e-159 564.7 289 100.0
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 9.0e-106 387.5 274 70.8
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.2e-104 382.9 275 67.3
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 8.4e-104 380.9 278 65.1
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.4e-103 380.2 275 66.9
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.5e-100 370.2 282 63.5
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 3.3e-100 369.0 284 63.0
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 9.6e-100 367.5 275 64.4
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.8e-99 365.9 275 64.4
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 3.7e-99 365.5 275 64.0
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 4.8e-99 365.2 275 64.7
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 1.4e-98 363.6 275 63.3
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 4.0e-98 362.1 292 60.6
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 4.0e-98 362.1 275 63.6
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 4.0e-98 362.1 291 61.5
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 5.3e-98 361.7 275 63.6
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 5.3e-98 361.7 275 65.1
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.2e-97 360.5 291 62.2
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 2.0e-97 359.8 275 64.7
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.6e-97 359.4 292 60.3
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 2.6e-97 359.4 292 60.6
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 5.8e-97 358.2 275 64.7
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 5.8e-97 358.2 275 63.6
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 7.6e-97 357.8 277 63.2
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 1.3e-96 357.1 277 61.4
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 1.7e-96 356.7 275 63.6
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.7e-96 356.7 282 61.3
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 2.9e-96 355.9 277 61.0
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 3.8e-96 355.5 275 63.6
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 3.8e-96 355.5 272 61.8
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 3.8e-96 355.5 281 58.4
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 4.9e-96 355.1 279 61.6
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 4.9e-96 355.1 277 62.8
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 6.5e-96 354.8 275 61.1
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 8.4e-96 354.4 275 60.7
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.4e-96 354.4 275 62.5
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 8.4e-96 354.4 277 61.7
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.1e-95 354.0 274 60.2
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.1e-95 354.0 275 61.5
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.4e-95 353.6 277 61.4
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.9e-95 353.2 275 64.4
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 2.5e-95 352.8 277 60.6
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.2e-95 352.4 273 62.6
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 3.2e-95 352.4 274 60.6
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 4.2e-95 352.1 275 60.7
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 4.2e-95 352.1 275 61.5
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 5.5e-95 351.7 275 63.6
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 7.1e-95 351.3 290 60.0
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 7.1e-95 351.3 275 64.0
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 7.1e-95 351.3 274 60.2
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 9.3e-95 350.9 275 61.5
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.2e-94 350.5 274 62.0
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 1.2e-94 350.5 275 63.3
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 2.1e-94 349.7 277 61.4
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.7e-94 349.4 274 63.5
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 2.7e-94 349.4 272 59.9
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 2.7e-94 349.4 274 62.0
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 3.5e-94 349.0 275 61.1
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 6.0e-94 348.2 275 62.9
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 7.9e-94 347.8 277 61.0
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 7.9e-94 347.8 277 61.0
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.0e-93 347.4 275 60.7
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.0e-93 347.4 282 59.6
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 1.0e-93 347.4 275 60.7
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 1.3e-93 347.1 275 59.6
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 1.8e-93 346.7 274 61.7
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.8e-93 346.7 274 61.7
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 1.8e-93 346.7 265 63.0
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.8e-93 346.7 275 59.3
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.8e-93 346.7 274 61.3
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.8e-93 346.7 288 59.4
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 1.8e-93 346.7 275 61.8
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 2.3e-93 346.3 275 62.9
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 2.3e-93 346.3 274 60.2
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.0e-93 345.9 277 59.9
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 3.9e-93 345.5 274 62.0
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 3.9e-93 345.5 275 59.6
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 6.7e-93 344.7 274 60.2
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 6.7e-93 344.7 282 61.0
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 8.7e-93 344.4 274 60.6
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 8.7e-93 344.4 274 61.7
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.1e-92 344.0 275 60.4
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.5e-92 343.6 275 62.9
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.9e-92 343.2 274 59.9
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 2.5e-92 342.8 274 58.8
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 2.5e-92 342.8 282 61.0
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 3.3e-92 342.4 274 60.2
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 3.3e-92 342.4 274 60.2
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 4.3e-92 342.0 274 60.6
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 4.3e-92 342.0 274 60.2
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 4.3e-92 342.0 274 59.5
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 5.7e-92 341.7 275 59.3
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 7.4e-92 341.3 277 61.7
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 9.7e-92 340.9 274 59.9
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 9.7e-92 340.9 274 59.9
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 9.7e-92 340.9 274 59.9
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 9.7e-92 340.9 277 59.2
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 1.3e-91 340.5 274 59.9
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 1.3e-91 340.5 296 57.4
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.3e-91 340.5 264 61.0
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 2.2e-91 339.7 277 61.4
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 2.8e-91 339.3 274 60.2
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.8e-91 339.3 274 60.2
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 2.8e-91 339.3 274 59.5
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.8e-91 339.3 275 58.9
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.8e-91 339.3 270 60.4
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.8e-91 339.3 277 61.0
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 4.8e-91 338.6 274 59.5
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 6.3e-91 338.2 274 58.8
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 6.3e-91 338.2 274 59.1
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 8.2e-91 337.8 274 60.2
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 8.2e-91 337.8 277 61.4
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.4e-90 337.0 277 61.0
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.8e-90 336.7 274 59.9
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.4e-90 336.3 270 59.6
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 2.4e-90 336.3 275 57.5
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 5.3e-90 335.1 277 58.5
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 6.9e-90 334.7 288 57.3
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 9.0e-90 334.3 277 56.7
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.2e-89 334.0 272 59.2
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 1.5e-89 333.6 277 58.1
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 2.6e-89 332.8 267 59.6
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 2.9e-88 329.3 259 62.2
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 5.0e-88 328.6 304 54.9
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 5.0e-88 328.6 253 62.5
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 8.5e-88 327.8 281 56.6
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.4e-87 327.0 274 57.7
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.9e-87 326.6 269 60.2
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.9e-87 326.6 277 56.3
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 5.5e-87 325.1 268 59.0
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.7e-86 322.8 252 61.9
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 5.7e-84 315.1 274 56.9
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.7e-83 313.5 278 56.5
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.4e-82 309.7 312 52.2
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 3.4e-81 305.8 282 56.4
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 1.3e-80 303.9 277 53.1
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.7e-80 303.5 279 55.9
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 6.5e-80 301.6 276 55.8
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 8.5e-80 301.2 285 58.9
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 4.2e-79 298.9 269 55.4
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 6.1e-78 295.0 292 54.8
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 4.1e-74 282.3 239 60.3
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 9.1e-74 281.2 268 51.5
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.2e-73 280.8 239 58.2
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 6.7e-69 265.0 186 67.7
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 1.8e-58 230.3 204 58.3
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 5.3e-58 228.8 189 60.3
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.6e-52 209.9 183 56.3
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 5.4e-50 202.2 172 59.9
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.6e-49 200.7 182 58.8
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.7e-49 199.9 239 49.0
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.9e-47 193.7 218 47.7
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 3.2e-42 176.4 162 54.9
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.2e-41 174.5 220 47.3
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 7.8e-41 171.8 159 51.6
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 6.6e-40 168.7 123 62.6
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 1.0e-37 161.4 175 49.1
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.2e-36 157.9 138 57.2
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 2.0e-36 157.1 249 39.4
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 3.0e-32 143.3 279 30.8
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 2.0e-28 130.6 93 62.4
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 6.4e-27 125.6 165 44.8
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 1.3e-24 117.9 76 68.4
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 6.8e-21 105.5 84 61.9
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.2e-19 100.5 68 70.6
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.9e-18 97.4 84 58.3
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 2.1e-17 94.0 161 39.1
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 8.6e-16 88.6 66 71.2
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.8e-13 80.9 89 47.2
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 2.2e-11 73.9 179 32.4


User provided reference genes

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