Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.3e-257 892.5 420 100.0
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 5.5e-205 717.6 419 78.3
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 7.0e-200 700.7 411 76.2
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.5e-165 586.6 393 67.7
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 9.2e-160 567.4 418 62.4
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.0e-158 563.9 418 62.2
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.0e-158 563.9 418 62.4
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.1e-158 561.6 418 62.2
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.8e-155 553.1 417 61.4
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 4.0e-155 552.0 418 61.2
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 5.2e-155 551.6 418 60.8
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.2e-154 550.4 418 61.0
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.5e-154 550.1 418 61.2
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.0e-154 549.7 417 61.4
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 3.4e-154 548.9 418 60.0
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.4e-154 548.9 417 60.9
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.4e-154 548.9 418 60.5
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 4.4e-154 548.5 418 61.0
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 4.4e-154 548.5 418 60.8
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 5.8e-154 548.1 418 60.8
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 7.6e-154 547.7 418 61.0
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 7.6e-154 547.7 418 60.8
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 9.9e-154 547.4 418 60.5
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 1.3e-153 547.0 418 60.0
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 1.3e-153 547.0 418 60.0
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.2e-153 546.2 418 60.0
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.2e-153 546.2 418 61.0
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 2.2e-153 546.2 418 59.8
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.9e-153 545.8 414 60.1
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 3.8e-153 545.4 418 60.3
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 4.9e-153 545.0 417 60.2
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 8.4e-153 544.3 418 60.0
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.4e-152 543.5 418 61.2
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.4e-152 543.5 418 60.5
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 1.4e-152 543.5 418 59.6
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.9e-152 543.1 418 60.8
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 1.9e-152 543.1 418 60.0
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.9e-152 543.1 418 60.3
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 4.1e-152 542.0 418 59.1
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 5.4e-152 541.6 418 59.6
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 5.4e-152 541.6 414 60.4
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 5.4e-152 541.6 418 60.0
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 7.1e-152 541.2 418 60.5
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 7.1e-152 541.2 418 58.6
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 1.2e-151 540.4 418 59.1
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 1.6e-151 540.0 418 59.8
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 1.6e-151 540.0 418 60.3
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 2.1e-151 539.7 418 60.0
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 2.1e-151 539.7 418 59.3
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 2.1e-151 539.7 418 58.6
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 3.5e-151 538.9 418 59.6
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 3.5e-151 538.9 418 61.0
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 3.5e-151 538.9 418 58.9
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 3.5e-151 538.9 418 58.9
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 7.8e-151 537.7 418 59.8
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.0e-150 537.3 418 59.8
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.0e-150 537.3 414 59.2
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.0e-150 537.3 418 58.6
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.3e-150 537.0 418 59.3
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 1.7e-150 536.6 418 59.8
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 2.3e-150 536.2 418 59.1
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.3e-150 536.2 418 59.3
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.0e-150 535.8 414 59.7
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 3.0e-150 535.8 414 59.7
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.9e-150 535.4 418 58.9
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 5.1e-150 535.0 418 59.1
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 6.6e-150 534.6 418 59.1
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 8.6e-150 534.3 418 58.9
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.1e-149 533.9 418 60.0
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 1.1e-149 533.9 418 60.3
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.5e-149 533.5 418 59.3
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 1.9e-149 533.1 418 59.1
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.9e-149 533.1 418 59.6
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.5e-149 532.7 418 59.3
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.3e-149 532.3 425 59.3
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 3.3e-149 532.3 414 57.0
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 4.3e-149 531.9 414 58.9
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 5.6e-149 531.6 418 58.9
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 7.3e-149 531.2 418 59.1
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 9.6e-149 530.8 419 57.3
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.6e-149 530.8 418 57.2
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.2e-148 530.4 418 58.6
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.2e-148 530.4 418 56.7
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.2e-148 530.4 414 58.9
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 4.7e-148 528.5 418 58.1
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.4e-147 526.9 418 58.6
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.4e-147 526.9 414 58.5
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 4.0e-147 525.4 418 58.6
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 5.2e-147 525.0 418 56.7
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 5.2e-147 525.0 418 57.9
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 5.2e-147 525.0 418 56.7
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 5.2e-147 525.0 418 56.7
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 6.9e-147 524.6 418 57.9
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 9.0e-147 524.2 418 58.1
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 9.0e-147 524.2 418 56.5
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 2.6e-146 522.7 418 58.9
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 7.6e-146 521.2 418 59.3
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.2e-145 519.6 418 56.5
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 8.4e-145 517.7 418 57.9
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.1e-144 517.3 418 58.4
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 1.9e-144 516.5 418 57.2
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.4e-144 516.2 418 57.4
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 3.2e-144 515.8 418 57.4
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 3.2e-144 515.8 418 58.9
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 4.2e-144 515.4 418 57.7
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.1e-143 513.1 414 57.0
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.8e-143 511.1 422 55.9
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 7.8e-143 511.1 422 55.7
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-142 510.4 414 58.2
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 1.3e-142 510.4 418 56.7
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.7e-142 510.0 422 56.2
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.3e-142 509.6 418 57.4
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 3.9e-142 508.8 422 55.9
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 8.7e-142 507.7 418 56.9
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-141 506.5 418 57.4
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-141 506.1 418 56.9
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 2.5e-141 506.1 418 56.9
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 3.3e-141 505.8 418 56.9
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 3.3e-141 505.8 418 56.5
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 7.3e-141 504.6 418 56.7
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.1e-140 503.1 418 56.5
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 2.1e-140 503.1 418 56.2
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 3.6e-140 502.3 418 56.9
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 4.8e-140 501.9 418 56.2
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 6.2e-140 501.5 418 56.5
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 8.1e-140 501.1 418 56.2
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 1.4e-139 500.4 418 56.2
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 1.4e-139 500.4 418 56.2
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 1.4e-139 500.4 418 56.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.8e-139 500.0 418 56.5
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 2.4e-139 499.6 418 56.2
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 9.0e-139 497.7 418 56.7
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 9.0e-139 497.7 418 55.7
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 2.6e-138 496.1 418 56.5
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 9.9e-138 494.2 418 55.5
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.7e-137 493.4 418 56.0
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.2e-137 493.0 422 54.7
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 8.4e-137 491.1 392 58.2
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.8e-132 476.1 373 59.2
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 2.8e-132 476.1 418 52.9
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 4.8e-132 475.3 419 54.7
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 8.1e-132 474.6 419 54.4
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 3.4e-130 469.2 424 52.6
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.1e-125 454.1 418 53.6
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 5.3e-115 418.7 418 51.0
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.6e-111 406.0 315 59.7
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 3.1e-107 392.9 293 61.8
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 1.3e-92 344.4 269 61.0
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 2.8e-92 343.2 278 57.2
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.4e-91 340.1 285 56.1
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 5.3e-91 339.0 298 53.7
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 2.9e-89 333.2 295 54.6
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.5e-69 267.7 417 35.7
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.3e-60 238.0 418 35.9
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 3.3e-40 170.2 196 45.9
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.0e-34 149.4 130 51.5
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 3.0e-33 147.1 132 53.0
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 8.7e-33 145.6 135 51.9
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.7e-33 145.6 130 50.8
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.5e-32 144.8 483 26.3
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-31 141.0 132 51.5
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-30 137.9 167 44.3
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 4.0e-30 136.7 295 29.8
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.2e-23 112.8 117 48.7
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 1.1e-22 112.1 111 49.5
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.9e-20 104.0 102 49.0
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 2.9e-20 104.0 102 49.0
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 6.4e-20 102.8 102 49.0
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 2.1e-18 97.8 102 48.0
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.3e-17 94.4 96 49.0
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.4e-14 85.1 75 48.0
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-14 84.3 89 42.7
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 1.2e-13 82.0 64 54.7
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.2e-11 73.6 67 55.2
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.2e-10 72.0 55 52.7
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.3e-09 68.6 67 50.7
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.1e-08 65.5 55 54.5
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.5e-08 64.3 72 45.8
Cc08_g01180 Coffea canephora HOM05D000597 ORTHO05D006307 1.1e-06 58.9 143 28.0
Lj9A644T53 Lonicera japonica HOM05D000597 ORTHO05D000603 1.1e-06 58.9 170 24.7
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 2.4e-06 57.8 177 26.6
Lj7C577T12 Lonicera japonica HOM05D000597 ORTHO05D000603 5.3e-06 56.6 152 26.3
Haze_19780 Corylus avellana HOM05D000597 ORTHO05D000603 9.0e-06 55.8 170 26.5
Glyma.09G225400 Glycine max HOM05D000597 ORTHO05D000603 9.0e-06 55.8 152 27.0
Oeu027352.1 Olea europaea HOM05D000597 ORTHO05D000603 9.0e-06 55.8 151 27.2


User provided reference genes

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