Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 3.2e-54 214.9 116 100.0
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 7.4e-35 150.6 113 68.1
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 9.7e-35 150.2 109 71.6
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.7e-34 149.4 113 68.1
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.2e-34 149.1 113 68.1
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 2.2e-34 149.1 115 69.6
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 2.2e-34 149.1 113 69.9
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 2.2e-34 149.1 113 69.0
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 3.7e-34 148.3 109 69.7
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 3.7e-34 148.3 111 68.5
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 3.7e-34 148.3 111 68.5
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 4.8e-34 147.9 115 67.8
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 4.8e-34 147.9 113 68.1
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 4.8e-34 147.9 112 68.8
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 8.2e-34 147.1 115 67.0
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 8.2e-34 147.1 108 71.3
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 1.1e-33 146.7 108 69.4
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 1.1e-33 146.7 109 69.7
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 1.8e-33 146.0 108 68.5
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.8e-33 146.0 109 69.7
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 2.4e-33 145.6 105 72.4
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 2.4e-33 145.6 105 72.4
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 2.4e-33 145.6 108 68.5
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 2.4e-33 145.6 107 70.1
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 3.1e-33 145.2 113 67.3
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 3.1e-33 145.2 109 68.8
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 3.1e-33 145.2 113 68.1
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 3.1e-33 145.2 108 70.4
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 3.1e-33 145.2 107 69.2
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 4.1e-33 144.8 108 69.4
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 4.1e-33 144.8 113 67.3
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 4.1e-33 144.8 113 65.5
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 4.1e-33 144.8 113 67.3
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 4.1e-33 144.8 114 65.8
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 5.3e-33 144.4 108 69.4
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 7.0e-33 144.1 114 66.7
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 9.1e-33 143.7 113 65.5
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 9.1e-33 143.7 108 68.5
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 9.1e-33 143.7 108 69.4
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.2e-32 143.3 115 67.0
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 1.2e-32 143.3 113 67.3
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 1.5e-32 142.9 116 64.7
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 1.5e-32 142.9 113 63.7
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 1.5e-32 142.9 113 67.3
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 1.5e-32 142.9 108 68.5
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 2.6e-32 142.1 108 66.7
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 2.6e-32 142.1 113 66.4
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 2.6e-32 142.1 109 68.8
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 3.5e-32 141.7 113 63.7
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 3.5e-32 141.7 113 66.4
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 4.5e-32 141.4 108 67.6
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 4.5e-32 141.4 120 64.2
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 4.5e-32 141.4 113 65.5
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 5.9e-32 141.0 108 68.5
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 5.9e-32 141.0 108 68.5
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 7.7e-32 140.6 113 66.4
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 7.7e-32 140.6 108 66.7
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 1.0e-31 140.2 113 64.6
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 1.0e-31 140.2 112 64.3
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 1.0e-31 140.2 115 66.1
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 1.0e-31 140.2 110 64.5
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 1.3e-31 139.8 108 65.7
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 1.3e-31 139.8 105 67.6
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 1.3e-31 139.8 113 64.6
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 1.7e-31 139.4 113 64.6
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 1.7e-31 139.4 108 65.7
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 2.2e-31 139.0 109 67.9
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 2.2e-31 139.0 113 67.3
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 2.2e-31 139.0 114 65.8
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 2.9e-31 138.7 109 66.1
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 2.9e-31 138.7 112 64.3
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 2.9e-31 138.7 112 64.3
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 6.5e-31 137.5 107 66.4
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 8.5e-31 137.1 114 63.2
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 1.1e-30 136.7 104 68.3
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 1.1e-30 136.7 106 67.9
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 1.5e-30 136.3 112 64.3
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 2.5e-30 135.6 110 64.5
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 3.2e-30 135.2 114 59.6
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 4.2e-30 134.8 113 62.8
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 5.5e-30 134.4 108 64.8
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 7.2e-30 134.0 109 65.1
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 2.7e-29 132.1 113 61.9
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 3.6e-29 131.7 111 60.4
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 4.7e-29 131.3 113 61.1
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 4.7e-29 131.3 106 63.2
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 8.0e-29 130.6 113 62.8
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 8.0e-29 130.6 108 63.0
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 1.0e-28 130.2 104 61.5
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 1.4e-28 129.8 113 60.2
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 2.3e-28 129.0 108 62.0
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 2.3e-28 129.0 113 62.8
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 3.0e-28 128.6 113 61.1
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 3.0e-28 128.6 114 61.4
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 3.9e-28 128.3 113 61.9
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 6.7e-28 127.5 109 64.2
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 6.7e-28 127.5 109 64.2
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 8.8e-28 127.1 113 58.4
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 8.8e-28 127.1 108 61.1
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 1.5e-27 126.3 108 61.1
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 1.5e-27 126.3 108 61.1
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 1.5e-27 126.3 108 61.1
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 1.5e-27 126.3 108 61.1
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 1.5e-27 126.3 108 61.1
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.0e-27 125.9 117 56.4
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 2.0e-27 125.9 113 60.2
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 2.6e-27 125.6 132 53.8
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 3.3e-27 125.2 113 58.4
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 3.3e-27 125.2 91 67.0
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 4.4e-27 124.8 109 58.7
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 4.4e-27 124.8 163 47.2
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 1.3e-26 123.2 95 67.4
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.3e-26 123.2 109 61.5
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.8e-26 122.1 108 59.3
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 4.8e-26 121.3 108 57.4
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 1.8e-25 119.4 108 57.4
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 2.4e-25 119.0 99 63.6
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 3.1e-25 118.6 105 61.0
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 4.1e-25 118.2 96 64.6
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 4.5e-24 114.8 105 58.1
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 2.2e-23 112.5 104 58.7
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 6.5e-23 110.9 98 57.1
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 6.5e-23 110.9 104 58.7
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 8.5e-23 110.5 104 57.7
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 8.5e-23 110.5 105 56.2
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 1.5e-22 109.8 104 56.7
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 1.5e-22 109.8 109 56.0
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 1.9e-22 109.4 104 56.7
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 1.9e-22 109.4 104 56.7
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 1.9e-22 109.4 104 56.7
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 1.9e-22 109.4 104 56.7
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 1.2e-21 106.7 104 54.8
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 1.6e-21 106.3 104 55.8
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 1.6e-21 106.3 104 55.8
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 2.0e-19 99.4 105 55.2
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 2.4e-17 92.4 106 46.2
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 9.4e-14 80.5 85 51.8
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 5.2e-12 74.7 67 61.2
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 9.8e-11 70.5 64 62.5
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 1.7e-07 59.7 67 56.7
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 5.0e-07 58.2 67 55.2
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 5.0e-07 58.2 59 57.6
Cre08.g383300 Chlamydomonas reinhardtii HOM05D005425 ORTHO05D006686 1.5e-06 56.6 98 37.8
Migut.M01776 Erythranthe guttata HOM05D004888 ORTHO05D005792 1.5e-06 56.6 101 38.6
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 1.9e-06 56.2 101 35.6
unitig_62.g23280 Utricularia gibba HOM05D004888 ORTHO05D005792 1.9e-06 56.2 99 38.4
SMO270G0016 Selaginella moellendorffii HOM05D004888 ORTHO05D005792 5.5e-06 54.7 100 37.0
Potri.011G138100 Populus trichocarpa HOM05D004888 ORTHO05D005792 9.5e-06 53.9 101 34.7


User provided reference genes

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